Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278165.1_202015-09-02] 4,504 sequences; 41,348,230 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq23 113 4e-20 seq500 109 5e-19 seq118 104 2e-17 >seq23 Length=76221 Score = 113 bits (124), Expect = 4e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || || || || ||| || || || |||| || Sbjct 19767 CACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 19826 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || |||||||||||||||| || | || ||| ||||| Sbjct 19827 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 19886 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||||||||| || | ||| | | | | || | ||||||||||| ||||||| | | Sbjct 19887 GATTTTCTGCTTCA-CGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATAGTCT 19945 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | ||||||| ||| || || ||||| ||||| || Sbjct 19946 TGCCCGTCAACGTCTTCACGAAGATCTGCATGTT 19979 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || || || || ||| || || || |||| || Sbjct 19539 CACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 19598 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || |||||||||||||||| || | || ||| ||||| Sbjct 19599 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 19658 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||||||||| || | ||| | | | | || | ||||||||||| |||||| | | Sbjct 19659 GATTTTCTGCTTCA-CGTTGTCGATAGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCT 19717 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||| ||| || || ||||| ||||| Sbjct 19718 TGCCCGTCAACGTCTTCACGAAGATCTGCAT 19748 >seq500 Length=16590 Score = 109 bits (120), Expect = 5e-19 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 || || || || ||||| | || || || |||| || ||||| ||||| || || || Sbjct 12837 TTCTGGATGTTGTAATCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 12896 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216 || ||||||||||| | || | || || |||||| ||||||||| |||| | | | | Sbjct 12897 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTGTC 12955 Query 39217 ACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275 | | | ||| || ||||||||||| |||||| | || |||||||| || || ||||| Sbjct 12956 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 13015 Query 39276 GATTTGCAT 39284 ||| ||||| Sbjct 13016 GATCTGCAT 13024 >seq118 Length=44280 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || ||||| ||| || || || || || ||| || || || |||| || Sbjct 11693 CACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTC 11752 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| || || || || ||||||||||| | || | || || |||||| Sbjct 11753 AAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTG 11812 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 |||||||| || | ||| | | | || || || ||||||||||| ||||| | | Sbjct 11813 AATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCT 11871 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | ||||||| || || |||||||| |||||||| Sbjct 11872 TGCCCGTCAAAGTCTTCACAAAGATCTGCATCTT 11905 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || ||||| ||| || || || || || ||| || || || |||| || Sbjct 11465 CACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTC 11524 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| || || || || ||||||||||| | || | || || |||||| Sbjct 11525 AAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTG 11584 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 |||||||| || | ||| | | | || || || ||||||||||| ||||| | | Sbjct 11585 AATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCT 11643 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||| || || |||||||| ||||| Sbjct 11644 TGCCCGTCAAAGTCTTCACAAAGATCTGCAT 11674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429522021168152