Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278215.1_202015-09-02] 4,406 sequences; 41,821,552 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq120 165 7e-36 >seq120 Length=42936 Score = 165 bits (182), Expect = 7e-36 Identities = 406/609 (67%), Gaps = 40/609 (7%) Strand=Plus/Minus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 || || ||||||||||| || || || ||||| || | ||| | ||| || || Sbjct 17592 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCGCCGATAACGTGAATAAATTCACCA 17533 Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044 || ||| || | || || || | ||| ||| || || |||||||| || |||||| Sbjct 17532 GGTTTCAACCCTGCCACTTGTGCCACTAGACGCGTAAGCAGCGCGTAGCTTGCAATGTTA 17473 Query 21045 AACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC 21104 ||||| || || || ||||||||||| || | |||||||| ||| || |||| |||||| Sbjct 17472 AACGGCACACCAAGACCCATGTCGGCCGAGCGCTGGTACATCTGACACGACAACTCCCCG 17413 Query 21105 CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC-CGCGCGAGGTC 21163 |||||||| || || || || | ||| || || || || |||||| || | || || Sbjct 17412 TCCGCCACGTAGAATTGGCAGAACATGTGGCACGGTGGCAGTGCCATCTCGTTC-AGATC 17354 Query 21164 CGCGGGGTTCCACGCGCACATAACGATGCGCCGAT-CGTGGG--------GCCGCCTGTT 21214 || ||||||||||| ||| ||||| || || | ||| || || || ||| Sbjct 17353 AGCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCGTCGGGTTCGTACGCAGCTTGTG 17294 Query 21215 AATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGC 21274 ||| ||| | | ||||||||||| ||||| || ||||| | || Sbjct 17293 AAT---------CACCTCAGCAAGCTGGTCCACGCCCTGTCCAGTGTAGTCCGTGTGCAT 17243 Query 21275 CCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC 21334 || ||||| || |||||||| | ||||||||| ||||| || || || || || || Sbjct 17242 GTCCGTGTACCTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACAGGTCCGAGGTCACC 17183 Query 21335 C---TCGCG-----GCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGC 21386 | ||||| || ||| ||| ||| ||||| | | |||||||| | | Sbjct 17182 CACTTCGCGCGACTGCAATCCTCGA----CTG----TCCAAATACTCTCGGGACCCATTC 17131 Query 21387 GCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCG-GTG-GAGTCGGTGGAGCCCCTGA 21444 ||||||| || | | | | | ||| || ||| | | ||| ||| || | Sbjct 17130 CCGTCCCAGATGTGAATGTCCTTCTGTTGCAG--CGTGTGCGCGCTCGTGTCGCCGCTAA 17073 Query 21445 TAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAG 21504 | |||||||||| ||||||| | ||||| | ||| ||||| | ||||| || | ||| | Sbjct 17072 TGAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCG 17013 Query 21505 GAAACTCGT 21513 | ||| ||| Sbjct 17012 GGAACACGT 17004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427753029230880