Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278215.1_202015-09-02] 4,406 sequences; 41,821,552 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2994 187 5e-42 seq105 183 6e-41 seq186 114 3e-20 seq1823 102 2e-16 seq3954 84.2 4e-11 seq3927 84.2 4e-11 >seq2994 Length=2301 Score = 187 bits (206), Expect = 5e-42 Identities = 572/861 (66%), Gaps = 29/861 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | ||||| ||||||| ||||| | Sbjct 1237 TCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATCCAGTCGAACGGGTTCTTC 1178 Query 251623 GCATTGTACTGCTTGGGATGG-CCAAGTGC-TACGAAGATGCGGTCTGCCACAAACTCCA 251680 | ||||| ||||| ||| || |||| ||| | | |||||| ||||| ||||| | Sbjct 1177 ACGTTGTAGATCTTGG-ATGCACCCAGTGAGTAC-AGCAGGCGGTCGGCCACGAACTCGA 1120 Query 251681 GATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGA---ATTGCCTCA 251736 ||||| | ||| || ||||||||||||| |||| | || ||| | | |||| Sbjct 1119 TGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCACGGGGAGCGAGTCGCTCA 1060 Query 251737 CAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGA 251796 | ||| || | || | | || || || ||| || || | ||| | | Sbjct 1059 C----GAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGTGCACGCGGCTCTCC 1004 Query 251797 GACAGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAA-CTGTTGGTGCAGACCCT 251854 | |||||||||| ||| ||| ||||||| ||| | ||| || | || ||||| |||| Sbjct 1003 GGCAGCTTGTTCACCAACTTCGAGTACATGAGGCACGCGAAGTCCGT--GTGCATGCCCT 946 Query 251855 CGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGA 251914 |||| || ||||||| |||||| || | | ||| |||||||| | || || ||| ||| Sbjct 945 CGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTCTTGA 886 Query 251915 GCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAA 251974 |||||||||| | ||| ||||| || ||||| | | ||||| || | | || | Sbjct 885 GCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTCCACGGCGGCGAACGCCA 826 Query 251975 CAAGGCGCTCAGCAAACGAC--TTGTCCTGCGACA-AGAACTTCTGTGCCCATGCTGCCT 252031 || ||||| | | ||| | | | || | |||| | ||||| |||| Sbjct 825 GCAGACGCTCCGGGTAGGACGAAACACGAGGGTCACACCACTTGAGCGCCCAGCGGGCCT 766 Query 252032 TCTT-TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCC-GCTCGGCATC 252089 |||| |||| | | ||||| || ||||| ||| | || || | ||| ||| | | Sbjct 765 TCTTCTCCACGCAC-GGGATCGTCTCGATGGCA-CGCAGCAAGTGATCCTTCTCCACGGC 708 Query 252090 GTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAA 252149 ||||| |||| || || | ||| || ||||||| |||||| |||||| ||| || Sbjct 707 GTCCTTGATGTACGTGTCGATCAGCAGCGAGTACACCTCCGAGTGGATGTTCTCGATGGC 648 Query 252150 CATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTT 252209 |||||| | | ||||| || || || | || || || ||||| | Sbjct 647 GATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACTTGCACCTCATTGCTGAAGTTCAT 588 Query 252210 TGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGAT 252269 || | |||||| |||| ||||| |||||| | || ||||| | || | | |||||| Sbjct 587 CGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAATGCTAGCACGTGCTTGAT 528 Query 252270 GAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGG 252329 |||||| ||||| | ||| | || || | |||||| | ||| || ||| Sbjct 527 GAAGTGGCGCTCGTTGTCCGTCAG---GTTCCCCCAGTCCTTCAGGTCGTGCACCAGGTC 471 Query 252330 AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCAG 252388 | || || |||||||||| | | | |||||||||||||||| ||| |||| || Sbjct 470 CAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCTTGTACATCTGC-CACACGTCGT 412 Query 252389 GGTACTTGATTGGGAA-AGCA 252408 | | || ||| ||||| |||| Sbjct 411 GCTCCTGGATCGGGAACAGCA 391 >seq105 Length=46447 Score = 183 bits (202), Expect = 6e-41 Identities = 453/674 (67%), Gaps = 30/674 (4%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || ||| | || |||||||||||||||||||| || | || |||| ||||| || | | Sbjct 31440 GTGGGTACCCTTTCGGGTGGTTGGAAGATGAAACTTGAGCTTGCTCGTGCCATGCTGCAG 31381 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 || || |||| || ||||||||||| || ||||| |||| || ||||| ||| Sbjct 31380 AAGGCAGACATCCTGCTCCTTGATGAGCCGACGAACCATTTGGATGTCAAGAACGTCGCC 31321 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | |||||| || || ||| ||| || | | |||| || || |||||| Sbjct 31320 TGGCTGGAGAACTACCTGACGAGCCTGCCGAACGTGACGAGCATCATGGTGTCGCACGAC 31261 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGA---GCAAAATCTGAAG 279932 ||||| ||||| || | || || | |||||||||||| || || || |||||| Sbjct 31260 TCTGGGTTCCTCGACACTGTCTGTACCAACATCATTCACTACGAGACGCGTAAGCTGAAG 31201 Query 279933 CTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCC 279992 ||| |||| |||||||| ||||||||||||| || |||||||| ||| Sbjct 31200 ATCTACAAG------GGCAACCTTTCTGCTTTCGTGGAGCAGAAGCCTGAGGCCAAGGCC 31147 Query 279993 TACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAG 280052 ||||| || ||| || | || || |||| ||||| ||||| || || || | Sbjct 31146 TACTACGAGCTGGAGTCTGACAACGTGAAGTTCACGTTCCCGGAGCCCGGCTTCCTTGCC 31087 Query 280053 GGCATC-ACATCAAAGG---ATCGCGCAATC--ATGAAGCTCCGTGGCGTCTCCTTTGCT 280106 | |||| | | ||| || | | || || ||| | | || ||| | | | Sbjct 31086 GACATCAAGAACAAGGGTAAACCCATCATTCGTCTGACGAACTGT-TCGTACCAGTACCC 31028 Query 280107 T---ATCCCAATGGCCCCAACATCTTCAGCAGT--GTCAACTCGCAGGTTTCTATGAACT 280161 | | ||| | | || ||| || || | | || || | ||| | || | Sbjct 31027 TGGCACCCCGAAG--CCGTCGATCAACAACATTTCGGTGACGTGC-GCTTTGT-CGAGC- 30973 Query 280162 CACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGA 280221 || || | || |||||||||| ||||| || ||||| ||| | |||||| | |||| Sbjct 30972 --CGTATCGCCGTGCTTGGACCCAACGGTGCCGGAAAGTCGACCATGATCAAAATGCTGA 30915 Query 280222 CTGGCGAGACCCAGGCCACTGAGGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGCT 280280 | || ||| || |||| ||| || | || |||||||| || |||||| | || Sbjct 30914 CGGGTGAGGTTGAGCCCAC-GAGTGGCCAGGTGTGGAAGCACCCTTCCATGCGTTTCGCC 30856 Query 280281 TACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAA 280340 || || || |||||||||||||||||||| ||| ||||| ||| ||| | ||||| Sbjct 30855 TATGTGGCCCAGCACGCTTTCCACCACATTGAGTCTCACCTCGACGAGACCGCGAACCAG 30796 Query 280341 TACATTCAGTGGCG 280354 ||||| |||||||| Sbjct 30795 TACATCCAGTGGCG 30782 Score = 114 bits (126), Expect = 3e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 279350 GGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTAC 279409 ||| ||||| |||| || |||||||| || || ||||| | ||||||||| ||| | Sbjct 31783 GGACCTGTGCAACTGCGAATTCTCGCTTGCCTACGGTGGTATGATTCTGCTGAACAACGC 31724 Query 279410 CCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAA 279469 |||||| | | ||||||||| |||| || ||||| ||| ||||| || ||||| Sbjct 31723 CCGCCTTCGCTTGAAGCGTGGCCACCGTTACGGTCTGTGCGGCCCCAACGGTTGTGGTAA 31664 Query 279470 GAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCATCTGA 279529 | ||||| |||||||| || | ||||||||||| || || || || | | || || Sbjct 31663 GTCGACTCTGATGCGCGCTATCTCCAACGGTCAGCTCGAGGGCTTCCCCAGCCGCTCCGA 31604 Query 279530 GGTAAGGACAGTGTATGTAGAGCACGAC 279557 | | | ||| |||| || |||||| || Sbjct 31603 GCTGAAGACTGTGTTCGTTGAGCACAAC 31576 >seq186 Length=34523 Score = 114 bits (126), Expect = 3e-20 Identities = 239/355 (67%), Gaps = 6/355 (2%) Strand=Plus/Minus Query 218654 TTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGC 218713 ||||||| || ||||| |||| ||||| || || |||| ||||||||||| |||| Sbjct 25058 TTAAGGTGGCGCAGTTGGCTGGCTATGTTTCGGAGCACTCTGCGTACCATCACGGAGAGC 24999 Query 218714 AGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGA 218773 ||||| |||| || || || |||||| ||||| | || || ||||||||||| Sbjct 24998 AGAGTTTGCAAGGCTGTATCGTGAACATGGCGCAGGATTTCGTTGGAAGTAACAACATCC 24939 Query 218774 ACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTT 218833 || | ||| || | ||||||||| ||| | ||||| |||| || |||||| ||| Sbjct 24938 ACCTTCTGTCTCCTATCGGTCAGTTCGGTACGCGTCTGATGGGCGGCAAGGATTCTGCCA 24879 Query 218834 CTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAAT---CAGG 218890 || | ||||| || || || ||| || | ||||| | | | | || | || Sbjct 24878 GCGCTCGTTATATTTTCACCAACTTGGAGCAGCTCACGCGACTTATCTACGATCCGCTGG 24819 Query 218891 CCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGT 218950 | | |||||| || |||||| | || || || || || || || ||||| |||| Sbjct 24818 ACAACGATGTG---CTGAAGTATTTGGATGAAGACGGCCAGTCTATCGAACCCGAATGGT 24762 Query 218951 ATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGG 219005 | | || || ||| | | ||||| || || |||||||||| ||||| Sbjct 24761 ACATCCCGATCATCCCGATGGTTCTCGTGAACGGCAGTGATGGTATCGGAACAGG 24707 >seq1823 Length=6297 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 446 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 387 Query 142563 CCCCAC 142568 |||||| Sbjct 386 CCCCAC 381 >seq3954 Length=1023 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 701 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 760 Query 142565 CCAC 142568 |||| Sbjct 761 CCAC 764 >seq3927 Length=1031 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 323 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 264 Query 142565 CCAC 142568 |||| Sbjct 263 CCAC 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027778776685446