Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278215.1_202015-09-02] 4,406 sequences; 41,821,552 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq105 161 2e-34 seq2994 104 5e-17 seq186 87.8 4e-12 >seq105 Length=46447 Score = 161 bits (178), Expect = 2e-34 Identities = 426/639 (67%), Gaps = 31/639 (5%) Strand=Plus/Plus Query 333722 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 333781 || || |||||| | || || || |||||||| |||||||||| | | ||||| Sbjct 31165 CTGCTCCACGAAAGCAGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGCGTC---TCGTA 31221 Query 333782 ATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCA 333841 || || || ||| || |||| |||||||||||| |||||||| ||||| || | || Sbjct 31222 GTGAATGATGTTGGTACAGACAGTGTCGAGGAACCCAGAGTCGTGCGACACCATGATGCT 31281 Query 333842 CGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAG 333901 || |||| | ||| | ||||||| | |||||| ||||| ||| | Sbjct 31282 CGTCACGTTCGGCAGGCTCGTCAGGTAGTTCTCCAGCCAGGCGACGTTCTTGACATCCAA 31341 Query 333902 ATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAG 333961 |||||| |||||||| ||||| || || | | ||| ||| | ||||| ||||| ||||| Sbjct 31342 ATGGTTCGTCGGCTCATCAAGGAGCAGGATGTCTGCCTTCTGCAGCATGGCACGAGCAAG 31401 Query 333962 AGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAAT 334021 | |||||||| ||||| || || ||||| || | || ||| || || Sbjct 31402 CTCAAGTTTCATCTTCCAACCACCCGAAAGGGTACCCA------CACCCTGGGCCTGCAT 31455 Query 334022 ATC------AAAGCCAACCGATTCTAGAGTAGTTAC-GATCTTTTCACGAGACCAAATGT 334074 || ||||| || | | || || || || | || || |||| | ||| Sbjct 31456 CTCCGGGGTGAAGCCCACGCTTCCGAGCGT-GTCACACACCTCGTCGCGAG---GAGTGT 31511 Query 334075 T-TTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGAC 334133 | ||| | || | || || || |||||||| | | | || | || ||||| Sbjct 31512 TCTTCAGGTCCTCATCCACCA--GG--ATGAAGTCCACCACGGACAACTCAGCCTCGGAA 31567 Query 334134 CCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAAC--ATCCGCAGAGGGGAACCCTT 334191 | | || | ||| || ||| | |||| |||| | | | || |||||| || | Sbjct 31568 GCCTGCAGGTTGTGCTCAACGAACACAGTCTTCAGCTCGGAGCGGC--TGGGGAAGCCCT 31625 Query 334192 CAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCAC 334251 | ||||||||||| ||||||||||||||||| || ||||| ||||| || || | Sbjct 31626 CGAGCTGACCGTTGGAGATAGCGCGCATCAGAGTCGACTTACCACAACCGTTGGGGCCGC 31685 Query 334252 ACAGACCGTAGCGGTTTCCACGCTTCAGATTGAA-CCGCGTATTGTTCAGAAGAATTTTT 334310 |||||||||| |||| |||||||||| | ||| || | |||||||| ||||| | Sbjct 31686 ACAGACCGTAACGGTGGCCACGCTTCA-AGCGAAGGCGGGCGTTGTTCAGCAGAATCATA 31744 Query 334311 CCACCATATGCCAGAGAAAATTCACAATCACACAGATCC 334349 ||||| || || || || ||||| || | ||||| ||| Sbjct 31745 CCACCGTAGGCAAGCGAGAATTCGCAGTTGCACAGGTCC 31783 Score = 93.3 bits (102), Expect = 9e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| |||||||| ||||||| ||||| |||||||| | ||| ||| || Sbjct 30757 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTCGCGGTCTCGTCGAG 30816 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 ||| ||| |||||||||||||| ||||| ||||| || || | |||||| || || Sbjct 30817 GTGAGACTCAATGTGGTGGAAAGCGTGCTGGGCCACATAGGCGAAACGCATGGAAGGGTG 30876 Query 333434 CTTCCAAAC 333442 |||||| || Sbjct 30877 CTTCCACAC 30885 >seq2994 Length=2301 Score = 104 bits (114), Expect = 5e-17 Identities = 272/410 (66%), Gaps = 4/410 (1%) Strand=Plus/Plus Query 243318 CGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGG 243377 ||| || || ||| | || || || |||||| ||||||| ||||| ||| || Sbjct 839 CGTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGG 898 Query 243378 TGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCA 243437 | |||||||| || | | || |||||| ||||||| || ||||||||| | ||| Sbjct 899 CCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACAC 958 Query 243438 ACAGTTCG-GTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACG-GTC 243495 | |||| ||| || ||||| || ||| | ||||||||| || || || || Sbjct 959 GGACTTCGCGTGC-CTCATGTACTCGAAGTTGGTGAACAAGCTGCCGGA-GAGCCGCGTG 1016 Query 243496 AAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCA 243555 | ||| | || || || | | || | || ||| | ||||| | | || Sbjct 1017 CACGCGATCGTGCGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCCC 1076 Query 243556 TGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGAC 243615 ||| || ||||||||||||| |||||| | ||||||||||| ||||| |||||| Sbjct 1077 GTGGAGCTGATCGGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGAC 1136 Query 243616 CGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTT 243675 ||| | | | | || ||| || | |||||| |||||||| || | || Sbjct 1137 CGCCTGCTGTACTCACTGGGTGCATCCAAGATCTACAACGTGAAGAACCCGTTCGACTGG 1196 Query 243676 ATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||||| | || ||||| || || || || ||||||||||| ||||| || Sbjct 1197 ATGGATATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGT 1246 >seq186 Length=34523 Score = 87.8 bits (96), Expect = 4e-12 Identities = 258/394 (65%), Gaps = 8/394 (2%) Strand=Plus/Plus Query 297244 GATGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATTCCACTCGA 297303 |||||| ||| ||||| | |||| | | |||||||| || ||||| ||| Sbjct 24667 GATGTCGAGTGGGTTGTAGTTGGGGACAGAGCTGGACCAACCTGTTCCGATACCATCACT 24726 Query 297304 ACCATTCACCAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTGTCACC 297363 || ||||| |||| |||| || | || | || | || |||||||| | || Sbjct 24727 GCCGTTCACGAGAACCATCGGGATGATCGGGATGTACCATTCGGGTTCGATAGACTGGCC 24786 Query 297364 GTCATCATACAGATATTTCAGAAGATTATCGTCC---GTATCGACGAAAACCTGTCGAGT 297420 ||| |||| || ||| ||||| | || | |||| | |||| || || |||| || Sbjct 24787 GTCTTCATCCAAATACTTCAGCACATCGTTGTCCAGCGGATCGTAGATAA---GTCGCGT 24843 Query 297421 CTGAGGGTTCAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAA 297480 | | | || || ||||||||||| || || || || |||||| || ||| || Sbjct 24844 GAGCTGCTCCAAGTTGGTGAAAATATAACGAGCGCTGGCAGAATCCTTGCCGCCCATCAG 24903 Query 297481 TCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATC 297540 | || ||||||||| || || ||| || |||||| || ||||| || |||| Sbjct 24904 ACGCGTACCGAACTGACCGATAGGAGACAGAAGGTGGATGTTGTTACTTCCAACGAAATC 24963 Query 297541 CTGTGCAAGGTTCACGATGGTCCCTTGCAGA-GATGCTTCGCCATGGTGATAGGCGCTAT 297599 ||| || | ||||||||| ||||||| | ||| || || || || || || | Sbjct 24964 CTGCGCCATGTTCACGATACAGCCTTGCAAACTCTGC-TCTCCGTGATGGTACGCAGAGT 25022 Query 297600 GCTCTGCAACGTAACCGCTGAACTGTGCAACCTT 297633 |||| | ||| || || ||||| || ||||| Sbjct 25023 GCTCCGAAACATAGCCAGCCAACTGCGCCACCTT 25056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102817740356100