Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278215.1_202015-09-02] 4,406 sequences; 41,821,552 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq544 98.7 8e-16 seq156 91.5 1e-13 >seq544 Length=15987 Score = 98.7 bits (108), Expect = 8e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 108453 CACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGC 108512 ||||||| || ||| | ||| ||| | || |||||||||||||| |||||||| || Sbjct 12373 CACCATCTTTCACTGGAGCCGCGACCACCGCGTGCACCACAAGTACTCGGACACGACCGC 12432 Query 108513 CGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGAC 108572 |||||| |||||| || | | || |||| ||| ||||| |||| |||||| || | | Sbjct 12433 CGACCCGCACAACTCCGGCCGCGGCTTCTTCTTCGCGCACATGGGCTGGCTCCTGGTCAA 12492 Query 108573 CAAGGACCCCGACGTGATCTCGGCCGG 108599 ||||||||| | ||| || ||| || Sbjct 12493 GAAGGACCCCAAGGTGGTCAAGGCTGG 12519 >seq156 Length=37458 Score = 91.5 bits (100), Expect = 1e-13 Identities = 179/265 (68%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 108336 CGTAGCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAA 108395 ||| ||||| | || | ||||| |||| || || | ||| | ||| | ||||| Sbjct 18922 CGTGGCCGGCCTGGGCATCACGGCGGGCGCGCACCGCCTCTGGTCGCACCGCGGGTACAA 18863 Query 108396 GGCCACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACAC 108455 ||||| ||| | | |||||||| ||| ||| |||| |||| || || Sbjct 18862 GGCCAAGCTGCCGCTGCGCGTGTTCCTCATGCTGTGCAACTCGATGGCCTTCGAGGGAAC 18803 Query 108456 CATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGA 108515 |||| | ||| || ||| ||| | || ||||||||| || |||||||||||||| Sbjct 18802 CATCTTCGACTGGTCGCGCGACCACCGCGTGCACCACAAGGGATCGGACACGACGGCCGA 18743 Query 108516 CCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAA 108575 ||| |||||| | | | || ||| ||||||||| |||| ||| ||||| || ||| Sbjct 18742 CCCGCACAACTCGGAGCGCGGCCTCTTCTTCTCGCACATGGGCTGGATCATGGTGCGCAA 18683 Query 108576 GGACCCCGACGTGATCTCGGCCGGT 108600 | || ||||| | |||||||| Sbjct 18682 GCACAAGAACGTGCGCGCGGCCGGT 18658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381752299516464