Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278215.1_202015-09-02] 4,406 sequences; 41,821,552 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2994 311 9e-80 seq44 158 1e-33 seq288 140 3e-28 seq985 116 4e-21 seq367 95.1 1e-14 >seq2994 Length=2301 Score = 311 bits (344), Expect = 9e-80 Identities = 552/795 (69%), Gaps = 10/795 (1%) Strand=Plus/Minus Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780 ||||| | ||||||||||||||||||||| || ||||| | | || | || | | Sbjct 1144 AGCAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATC 1085 Query 132781 AGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839 || ||| || |||| ||| | | ||| ||| |||| || | || ||||| || Sbjct 1084 AGCTCCACGGGGAGCGAGTCGCTCACGAACTCGT-GCTCAATCACCACAGCGTCACGCAC 1026 Query 132840 GATTTCCCTAACGCGCGCCGCGCTCGGCCG-TTG--CACCAAATGCTTGAACATCAAGCA 132896 ||| | | | |||| | | | |||| | ||| |||||| | | | |||| | ||| Sbjct 1025 GAT--CGCGTGCACGCGGCTCTC-CGGCAGCTTGTTCACCAACTTCGAGTACATGAGGCA 969 Query 132897 AGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCC 132956 || ||||| |||| ||||||||||| | ||||| ||||| ||| ||| || Sbjct 968 CGCGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACC 909 Query 132957 GGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGAC 133016 |||||||||||||| || |||||||| || |||| | ||| ||||| ||||| | Sbjct 908 AGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAAT 849 Query 133017 GCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGAT 133076 |||||| ||||| ||||| |||| ||| ||||| | | | | | | | Sbjct 848 GCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGACGAAACACGAGGGTCACA 789 Query 133077 CCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAA 133136 ||| |||||||| |||||| | | |||||||| ||||| |||||||| || Sbjct 788 CCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAG 729 Query 133137 CAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTC 133196 ||| | ||||| | | | | ||| |||||||| || ||| |||| || Sbjct 728 CAAGTGATCCTTCTCCACGGCGTCCTTGATGTACGTGTCGATCAGCAGCGAGTACACCTC 669 Query 133197 CGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTG 133256 |||||| | |||||| |||||||| || |||||||| ||||| || ||||| ||| || Sbjct 668 CGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACTTG 609 Query 133257 CACTTCTTGAGCGAAACGC-TCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGA 133315 ||| || | ||| | ||| |||| || ||||| ||||||||||||||||| |||| Sbjct 608 CACCTCATTGCTGAAGTTCATCG-CCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGA 550 Query 133316 AAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGC 133375 | || || ||||||||||||||||| |||||||||||||| ||| | | ||||||| Sbjct 549 AGAATGCTAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTCAGGTTCCCCCAGTCCT 490 Query 133376 GCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGT 133435 | ||| | |||||||| ||||||| | ||||| ||||||||||| || || |||| Sbjct 489 TCAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCTTGT 430 Query 133436 ACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGC 133495 |||| ||||| ||| | || || || || | ||| |||||| ||||| || Sbjct 429 ACATCTGCCACACGTCGTGCTCCTGGATCGGGAACAGCACGAACCGGTTCGGGTTCTCCA 370 Query 133496 GCAACAGCGGCTCCG 133510 || | |||||||| Sbjct 369 CCAGGAACGGCTCCG 355 >seq44 Length=74865 Score = 158 bits (174), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | |||||||| |||||||| | ||||| ||| | | Sbjct 19976 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 19917 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | |||| | || | ||||||| ||||| ||||| || || ||||||| Sbjct 19916 GACTCCATCGACAACG-TGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCA 19858 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 19857 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAA 19798 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | |||||||| |||||||||||| || | || ||| Sbjct 19797 CATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTGCGTGGTGGC 19749 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | |||||||| |||||||| | ||||| ||| | | Sbjct 19748 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 19689 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | |||| | || | ||||||| ||||| ||||| || || ||||||| Sbjct 19688 GACTCCATCGACAACG-TGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCA 19630 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 19629 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAA 19570 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | |||||||| |||||||||||| | | ||||| Sbjct 19569 CATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTTCGCGGCGG 19522 >seq288 Length=48189 Score = 140 bits (154), Expect = 3e-28 Identities = 174/233 (75%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || | |||||||| || |||||| | ||||| ||| | Sbjct 16050 AAGATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCG 15991 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-G 38358 | ||| | | |||| | || | ||||| | ||||| || || || |||||| | Sbjct 15990 TCGGACTCGATCGACAACG-TGAAGCAGAAAATTCAGGACAAGGAAGGCAT-CCCGCCTG 15933 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| || |||| ||| ||||| ||||| || |||| ||||| || | ||||| Sbjct 15932 ACCAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACT 15873 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| ||||| | |||||||| ||||||||||| || | |||||| Sbjct 15872 ACAACATCCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGTCTGCGTGGCGGC 15820 Score = 132 bits (146), Expect = 5e-26 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | |||||||| || |||||| | ||||| ||| | | Sbjct 15819 ATGCAGATCTTTGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCGTCG 15760 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || | ||||| | ||||| || || || |||||| |||| Sbjct 15759 GACTCGATCGACAACG-TGAAGCAGAAAATTCAGGACAAGGAAGGCAT-CCCGCCTGACC 15702 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || |||| ||| ||||| ||||| || |||| ||||| || | |||||||| Sbjct 15701 AGCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACA 15642 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | |||||||| ||||||||||| || | ||||| Sbjct 15641 ACATCCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGTCTGCGTGGCGG 15593 >seq985 Length=8132 Score = 116 bits (128), Expect = 4e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| | ||||| ||| | || Sbjct 3567 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 3626 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||||| | | | | || | ||||||| ||||| || || ||||| | ||||| Sbjct 3627 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAG 3686 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||||| || |||| ||||| ||| || |||||| Sbjct 3687 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGATTACAAC 3746 Query 38424 ATCCAAAAGGAAGCGACGC 38442 ||||| |||| |||| || Sbjct 3747 ATCCAGAAGGGTGCGATGC 3765 >seq367 Length=40791 Score = 95.1 bits (104), Expect = 1e-14 Identities = 98/126 (78%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 ||||| ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 7007 GGAATCCCCCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 7066 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 || || ||||||||||| || ||||| ||| |||||||| ||||||||||| || | Sbjct 7067 ACTCTTTCGGACTACAACATTCAGAAGGAGAGC-ACGCTGCACCTGGTGCTGCGTCTGCG 7125 Query 38465 AGGCGG 38470 || || Sbjct 7126 TGGTGG 7131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500145252983040