Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278215.1_202015-09-02] 4,406 sequences; 41,821,552 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq120 194 1e-44 >seq120 Length=42936 Score = 194 bits (214), Expect = 1e-44 Identities = 444/662 (67%), Gaps = 11/662 (2%) Strand=Plus/Minus Query 29876 AGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCC 29935 || || || |||| | ||| || || || ||||| || | ||| | ||| || || Sbjct 17592 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCGCCGATAACGTGAATAAATTCACCA 17533 Query 29936 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29995 |||| | ||| | || || |||| | ||| || || | |||||| || |||||| Sbjct 17532 GGTTTCAACCCTGCCACTTGTGCCACTAGACGCGTAAGCAGCGCGTAGCTTGCAATGTTA 17473 Query 29996 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG 30055 || || || || || |||||||| |||| | |||||| | ||||||||| | ||| ||| Sbjct 17472 AACGGCACACCAAGACCCATGTCGGCCGAGCGCTGGTACATCTGACACGACAACTCCCCG 17413 Query 30056 TCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115 || |||||| || || || | ||||||||| || || ||||| | || || Sbjct 17412 TCCGCCACGTAGAATTGGCAGAACATGTGGCACGGTGGCAGTGCCATCTCGTTCAGATCA 17353 Query 30116 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGG 30172 |||||||| || ||| | ||| || | ||| ||||| | | | || | Sbjct 17352 GCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCGTCGGGTTCGTACGCAGCTTGTGA 17293 Query 30173 TCCACGGCGTTTTGCA-GCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGT 30231 ||| | ||| |||| ||||| ||| || | |||||| | ||||||||| Sbjct 17292 ATCACCTCA----GCAAGCTGGTCCACGCCCTGTCCAGTGTAGTCCGTGTGCATGTCCGT 17237 Query 30232 GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 30291 |||| || || ||||| | ||||||||| ||||| || ||||| ||||| ||| |||| Sbjct 17236 GTACCTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACAGGTCCGAGGTCACCCACTTC 17177 Query 30292 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30351 | || || || | |||||||| | |||| ||| || || |||||||||| | Sbjct 17176 GCGCGACTGCAATCCTCGACTGTCCAAATACTCTCGGGACCCATTCCCGTCCCAGATGTG 17117 Query 30352 TACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 30411 | |||||| ||| | | | | ||| || || | ||||||||||||||| Sbjct 17116 AATGTCCTTCTGTTGCAGCGTGTGCGCGCTCGTGTCGCCGCTAATGAACCACAGCAGCTC 17057 Query 30412 CTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAA-ACTGTCCCT-T 30468 |||| | ||| | ||| || || | |||||||||||| || ||||| || || || | Sbjct 17056 CTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAACACGTTCTCTCT 16997 Query 30469 GAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCCTGTCTCC 30528 || | | ||| ||| | |||||||| ||||| || |||||||| | |||||| Sbjct 16996 CAGACTGAACCGCATCTGTGCTCCAAACACCGACAACGTGCCAGTGCCCGTGCGGTCTCC 16937 Query 30529 CC 30530 || Sbjct 16936 CC 16935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406288581893352