Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278215.1_202015-09-02] 4,406 sequences; 41,821,552 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq44 104 1e-17 seq367 87.8 1e-12 >seq44 Length=74865 Score = 104 bits (114), Expect = 1e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||||| |||||| || || || |||||| || ||||| || || Sbjct 19522 CCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 19581 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || ||||| || || | |||||| ||||| ||||| Sbjct 19582 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 19641 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| || || || ||| | || | ||| |||||| Sbjct 19642 ATGCCCTCCTTGTCTTGGATTTTCTG-CTTCACGTTGTCGATGGAGTCCGAAGGCTCCAC 19700 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || || || || || || ||||| ||||| || ||||||||| Sbjct 19701 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 19749 Score = 96.9 bits (106), Expect = 2e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||| || || || |||||| || ||||| || || || || || Sbjct 19759 AGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGA 19818 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || | |||||| ||||| ||||| | |||||| Sbjct 19819 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCC 19878 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || || || ||| | || | ||| |||||| |||| || Sbjct 19879 TTGTCTTGGATTTTCTG-CTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGT 19937 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || ||||| ||||| || ||||||||| Sbjct 19938 GATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 19977 >seq367 Length=40791 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| || || ||||||||||| |||||||| || || ||||| || || Sbjct 7122 AGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGG 7063 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCC 34604 |||| || || || || ||||| || || | |||||| ||||| || || | ||| Sbjct 7062 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGGGGATTCC 7007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314712699610598