Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278215.1_202015-09-02] 4,406 sequences; 41,821,552 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq120 89.7 2e-13 >seq120 Length=42936 Score = 89.7 bits (98), Expect = 2e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 52080 TCTGCTTGGAATGTGGGTGATTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTC 52139 ||||| ||||| | |||| || | || ||||| || | || ||||| | | | | Sbjct 17336 TCTGCGTGGAACCCTGCTGATCTGAACGAGATGGCACTGCCACCGTGCCACATGTTCTGC 17395 Query 52140 CAATTCTATGTAGCTGAAGGTAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATG 52199 |||||||| || || || || || | ||||| || |||| ||||| || ||||||||| Sbjct 17396 CAATTCTACGTGGCGGACGGGGAGTTGTCGTGTCAGATGTACCAGCGCTCGGCCGACATG 17455 Query 52200 T-TCTTGGGCGTTCCGTTTAACATTGCCAGCTATTCCTTGCTGACGCATCT 52249 |||||| || |||||||||||||| ||||| | |||| |||| ||| Sbjct 17456 GGTCTTGGT-GTGCCGTTTAACATTGCAAGCTACGCGCTGCTTACGCGTCT 17505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190086053939660