Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278215.1_202015-09-02] 4,406 sequences; 41,821,552 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq44 174 3e-38 seq288 152 1e-31 seq985 131 4e-25 seq367 109 1e-18 seq105 109 1e-18 >seq44 Length=74865 Score = 174 bits (192), Expect = 3e-38 Identities = 177/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || |||| || | ||| || || |||||||||||||| Sbjct 19750 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 19809 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||||| ||| || ||||| ||| Sbjct 19810 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 19869 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||||||||| || ||| || ||| | ||||| | |||||||| || || Sbjct 19870 ATGCCCTCCTTGTCTTGGATTTTCTGC-TTCACGTTGTCGATGGAGTCCGAAGGCTCCAC 19928 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 19929 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 19976 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||| || | ||| || || |||||||||||||| Sbjct 19522 CCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 19581 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||||| ||| || ||||| ||| Sbjct 19582 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 19641 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||||||||| || ||| || ||| | ||||| | |||||||| || || Sbjct 19642 ATGCCCTCCTTGTCTTGGATTTTCTGC-TTCACGTTGTCGATGGAGTCCGAAGGCTCCAC 19700 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 19701 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 19748 >seq288 Length=48189 Score = 152 bits (168), Expect = 1e-31 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 15821 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15880 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| || || || || || || || || |||| || || |||||| ||| Sbjct 15881 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 15940 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| || || || ||| || ||| | ||||| | |||||| | || || Sbjct 15941 ATGCCTTCCTTGTCCTGAATTTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCAC 15999 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | ||||||||||| |||||||||||||| ||||| |||||||| || Sbjct 16000 GTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTT 16050 Score = 149 bits (164), Expect = 1e-30 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 15592 ACCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 15651 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| || || || || || || || || |||| || || |||||| ||| Sbjct 15652 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 15711 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || || |||||||| || || || ||| || ||| | ||||| | |||||| | || | Sbjct 15712 GATGCCTTCCTTGTCCTGAATTTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCA 15770 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || | ||||||||||| |||||||||||||| || || |||||||| Sbjct 15771 CGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 15819 >seq985 Length=8132 Score = 131 bits (144), Expect = 4e-25 Identities = 144/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || ||||||||||| || | ||||||||||| ||||| || || || ||||| |||||| Sbjct 3754 TTCTGGATGTTGTAATCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 3695 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | || || |||||| |||||| || |||||||| ||||| || ||| || || | || Sbjct 3694 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGC-TTGACATTGTC 3636 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||| || | || || || || ||||| ||||| ||||||| ||||| || || Sbjct 3635 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 3576 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 3575 GATCTGCAT 3567 >seq367 Length=40791 Score = 109 bits (120), Expect = 1e-18 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || ||||| || | |||||| || || || ||||||||||| | Sbjct 7132 ACCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGA 7073 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 ||| |||||||| ||||| || || || ||||| ||||||| ||| || |||||| Sbjct 7072 AAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCA 7018 Score = 86.0 bits (94), Expect = 1e-11 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 282994 TACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||| ||||| || ||||| || | || || ||||||| | || || Sbjct 6947 TACCCTCCTTGTCCTGGATTTTCTGCTTG-ACATTGTCAATGCTGTCCGACGGCTCCACG 6889 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 ||||| ||||| ||||| ||||| | ||||| ||||| |||||||||||| Sbjct 6888 TCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATTTTC 6838 >seq105 Length=46447 Score = 109 bits (120), Expect = 1e-18 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 317029 GGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCA 317088 ||||| || || | ||||||||| || || | |||||| |||||||| ||| ||| Sbjct 31616 GGGAAGCCCTCGAGCTGACCGTTGGAGATAGCGCGCATCAGAGTCGACTTACCACAACCG 31675 Query 317089 TTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGA 317148 ||||||||||| ||||| || || | || ||||| || |||| ||||||||| Sbjct 31676 TTGGGGCCGCACAGACCGTAACGGTGGCCACGCTTCAAGCGAAGGCGGGCGTTGTTCAGC 31735 Query 317149 AGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCC 317196 |||||| ||||||| || || || ||||| || || | ||||||||| Sbjct 31736 AGAATCATACCACCGTAGGCAAGCGAGAATTCGCAGTTGCACAGGTCC 31783 Score = 96.9 bits (106), Expect = 7e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| |||||||| ||||||| ||||||||||| || | ||| ||| || Sbjct 30758 TCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTCGCGGTCTCGTCGAGG 30817 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 ||| ||| |||||||||||||||||||| ||||| || || | |||||| || ||| Sbjct 30818 TGAGACTCAATGTGGTGGAAAGCGTGCTGGGCCACATAGGCGAAACGCATGGAAGGGTGC 30877 Query 316282 TTCCAAAC 316289 ||||| || Sbjct 30878 TTCCACAC 30885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046680109609524