Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278225.1_202015-09-02] 4,540 sequences; 41,842,896 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq344 194 2e-44 >seq344 Length=43319 Score = 194 bits (214), Expect = 2e-44 Identities = 394/585 (67%), Gaps = 0/585 (0%) Strand=Plus/Minus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||||| |||||||| || || || |||||||| || | ||||| || || || || Sbjct 17216 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCGCCGATAACGTGAATAAATTCACCA 17157 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTG 145803 || | | || | | || || || | || ||||| | |||||| || ||||| Sbjct 17156 GGTTTCAACCCTGCCACTTGTGCCACTAGACGCGTAAGCAGCGCGTAGCTTGCAATGTTA 17097 Query 145804 AAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCG 145863 || ||||| || || |||||||| ||||||||||||||| ||| || || | ||||||| Sbjct 17096 AACGGCACACCAAGACCCATGTCGGCCGAGCGCTGGTACATCTGACACGACAACTCCCCG 17037 Query 145864 CCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCC 145923 ||||||||||||| ||||| | | |||||| || ||||| ||||| || ||| || Sbjct 17036 TCCGCCACGTAGAATTGGCAGAACATGTGGCACGGTGGCAGTGCCATCTCGTTCAGATCA 16977 Query 145924 GCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCT 145983 || |||||||| || | | |||| || | | | |||||| | | || Sbjct 16976 GCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCGTCGGGTTCGTACGCAGCTTGTGA 16917 Query 145984 ATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTAC 146043 |||| || ||||||||||||||||| || ||| || || | |||| |||| Sbjct 16916 ATCACCTCAGCAAGCTGGTCCACGCCCTGTCCAGTGTAGTCCGTGTGCATGTCCGTGTAC 16857 Query 146044 GCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTG 146103 ||| || || || | ||||||||| |||||||| || || ||||| || || | Sbjct 16856 CTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACAGGTCCGAGGTCACCCACTTCGCGC 16797 Query 146104 TGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACG 146163 | || || | | | | | || |||||||| || |||||||||| | | | Sbjct 16796 GACTGCAATCCTCGACTGTCCAAATACTCTCGGGACCCATTCCCGTCCCAGATGTGAATG 16737 Query 146164 CCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCG 146223 || || ||| | | | |||| || || |||||||| |||||||| || Sbjct 16736 TCCTTCTGTTGCAGCGTGTGCGCGCTCGTGTCGCCGCTAATGAACCACAGCAGCTCCTCC 16677 Query 146224 AGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAAC 146268 || || | |||||| || | |||||| || ||||| |||||| Sbjct 16676 GCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAAC 16632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590043313141600