Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278225.1_202015-09-02] 4,540 sequences; 41,842,896 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq264 86.0 5e-12 seq40 82.4 6e-11 >seq264 Length=48314 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| |||||||||||| || || ||||| || || || | |||| || Sbjct 15695 CACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTC 15754 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || || |||| || | |||||| || || | ||| || ||||| Sbjct 15755 AAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTG 15814 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||||||||| || || | | ||| | || |||||| || | ||| || || || Sbjct 15815 AATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCTT 15874 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || ||||| || ||||| || ||||| Sbjct 15875 GCCCGTCAAAGTCTTCACAAAGATCTGCAT 15904 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| |||||||||||| || || ||||| || || || | |||| || Sbjct 15923 CACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTC 15982 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || || |||| || | |||||| || || | ||| || ||||| Sbjct 15983 AAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTG 16042 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||||||||| || || | | ||| | || |||||| || | ||| || || || Sbjct 16043 AATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCTT 16102 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || || ||||| || || || || ||||| || Sbjct 16103 GCCCGTCAAAGTCTTCACGAAGATCTGCATCTT 16135 >seq40 Length=72588 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| |||||||||||| || || ||||| || || || ||||||| Sbjct 19418 CACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 19477 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || | |||||| || || | |||||| ||||| Sbjct 19478 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 19537 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||||| || || | | ||| | || ||||||| || | || ||||| || Sbjct 19538 GATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTT 19597 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || || || || || ||||| Sbjct 19598 GCCCGTCAACGTCTTCACGAAGATCTGCAT 19627 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| |||||||||||| || || ||||| || || || ||||||| Sbjct 19646 CACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 19705 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || | |||||| || || | |||||| ||||| Sbjct 19706 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 19765 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||||| || || | | ||| | || ||||||| || | || ||||| || Sbjct 19766 GATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTT 19825 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || || || || || ||||| Sbjct 19826 GCCCGTCAACGTCTTCACGAAGATCTGCAT 19855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414549861168760