Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278225.1_202015-09-02] 4,540 sequences; 41,842,896 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq344 199 3e-46 >seq344 Length=43319 Score = 199 bits (220), Expect = 3e-46 Identities = 445/662 (67%), Gaps = 11/662 (2%) Strand=Plus/Minus Query 29803 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 29862 || || || ||||| | ||| || || || ||||| || | ||| | ||| || || Sbjct 17216 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCGCCGATAACGTGAATAAATTCACCA 17157 Query 29863 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29922 |||| | ||| | || || |||| | ||| || || | |||||| || |||||| Sbjct 17156 GGTTTCAACCCTGCCACTTGTGCCACTAGACGCGTAAGCAGCGCGTAGCTTGCAATGTTA 17097 Query 29923 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG 29982 || || || || || |||||||| |||| | |||||| | ||||||||| | ||| ||| Sbjct 17096 AACGGCACACCAAGACCCATGTCGGCCGAGCGCTGGTACATCTGACACGACAACTCCCCG 17037 Query 29983 TCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30042 || |||||| || || || | |||||||||| || || ||||| | || || Sbjct 17036 TCCGCCACGTAGAATTGGCAGAACATGTGGCACGGTGGCAGTGCCATCTCGTTCAGATCA 16977 Query 30043 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGG 30099 |||||||| || ||| | ||| || | ||| ||||| | | | || | Sbjct 16976 GCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCGTCGGGTTCGTACGCAGCTTGTGA 16917 Query 30100 TCCACGGCGTTTTGCA-GCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGT 30158 ||| | ||| |||| ||||| ||| || | |||||| | ||||||||| Sbjct 16916 ATCACCTCA----GCAAGCTGGTCCACGCCCTGTCCAGTGTAGTCCGTGTGCATGTCCGT 16861 Query 30159 GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 30218 |||| || || ||||| | ||||||||| ||||| || ||||| ||||| ||| |||| Sbjct 16860 GTACCTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACAGGTCCGAGGTCACCCACTTC 16801 Query 30219 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30278 | || || || | |||||||| | |||| ||| || || |||||||||| | Sbjct 16800 GCGCGACTGCAATCCTCGACTGTCCAAATACTCTCGGGACCCATTCCCGTCCCAGATGTG 16741 Query 30279 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 30338 | |||||| ||| | | | | ||| || || | ||||||||||||||| Sbjct 16740 AATGTCCTTCTGTTGCAGCGTGTGCGCGCTCGTGTCGCCGCTAATGAACCACAGCAGCTC 16681 Query 30339 CTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAA-ACTGTCCCT-T 30395 |||| | ||| | ||| || || | |||||||||||| || ||||| || || || | Sbjct 16680 CTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAACACGTTCTCTCT 16621 Query 30396 GAGGCCGTACATGGCCTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCCTGTCTCC 30455 || | | || ||| | |||||||| ||||| || |||||||| | |||||| Sbjct 16620 CAGACTGAACCGCATCTGTGCTCCAAACACCGACAACGTGCCAGTGCCCGTGCGGTCTCC 16561 Query 30456 CC 30457 || Sbjct 16560 CC 16559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408594990677420