Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278225.1_202015-09-02] 4,540 sequences; 41,842,896 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2965 221 1e-51 seq298 203 4e-46 seq797 197 2e-44 seq178 154 2e-31 seq148 132 6e-25 seq440 125 9e-23 seq247 123 3e-22 seq279 122 1e-21 seq78 107 2e-17 seq663 102 1e-15 seq46 98.7 1e-14 seq89 96.9 4e-14 seq872 87.8 2e-11 seq363 86.0 8e-11 >seq2965 Length=1496 Score = 221 bits (244), Expect = 1e-51 Identities = 230/299 (77%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||||||||||||||||||||||||||||||||| ||| | |||| | ||||| Sbjct 669 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACTT 610 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | ||||| || |||| |||||||||||| |||||||||||||||||| |||| Sbjct 609 GCACCTCATTGCTGAAGTTCATCGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGA 550 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || || || ||||||||||| ||||||||||||| ||| | || | |||||| Sbjct 549 AGAATGCTAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTCAGGTTCCCCCAGTCCT 490 Query 869811 CGGTGTCG-GCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 |||| || | ||||||| ||||||||| ||||||| ||| ||||| ||||| ||| Sbjct 489 TCAGGTCGTGCAC-CAGGTCCAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCTTG 431 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 ||||||| ||| || | || | |||| ||||| || || || ||||| ||||| || Sbjct 430 TACATCTGCCACACGTCGTGCTCCTGGATCGGGAACAGCACGAACCGGTTCGGGTTCTC 372 Score = 203 bits (224), Expect = 4e-46 Identities = 242/319 (76%), Gaps = 12/319 (4%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||||| |||||||||||||||| |||||| |||||||||||||||| ||||||||| Sbjct 1264 GCCTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATC 1205 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTC-GCATCCGAGCGACGC 868809 | |||||||| ||||||||| | |||||| ||| ||| || || || Sbjct 1204 ATATCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCC-AGTGAGTA 1146 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 |||||||||||||| || ||||||||||||||||||||||| | | |||||||||||| Sbjct 1145 CAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGAT 1086 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACG-A 868928 ||| |||| || ||||| |||||||| ||||| | ||| ||| | || || || ||| | Sbjct 1085 CAGCTCCACGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTC-ACGCA 1027 Query 868929 TGATCTGCCTGGGCACGTCGG----CCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGG 868984 |||| || | ||||| ||| ||| ||||||| || | | ||| ||| | ||| Sbjct 1026 CGATC-GC--GTGCACG-CGGCTCTCCGGCAGCTTGTTCACCAACTTCGAGTACATGAGG 971 Query 868985 CAGGCAAAGTCGCAGTGCA 869003 || || ||||| ||||| Sbjct 970 CACGCGAAGTCCGTGTGCA 952 Score = 143 bits (158), Expect = 3e-28 Identities = 200/278 (72%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| || ||||| | ||||| ||| || || |||||||||||||||||| Sbjct 949 CCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTC 890 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||||| |||||| |||||||| || |||||||| |||||||| || Sbjct 889 TTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTCCACGGCGGCGAAC 830 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 | | || ||||| | || | ||| | | || |||||| | ||||||| Sbjct 829 GCCAGCAGACGCTCCGGGTAG--GACGAAACAC-GAGGGTCACACCACTTGAGCGCCCAG 773 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 |||||| ||| ||| |||| | ||| |||||||| || | | ||| ||||| || Sbjct 772 CGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAGCAAGTGATCCTTCTCC 713 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 | | |||||||| || ||||||||||| ||||| || Sbjct 712 ACGGCGTCCTTGATGTACGTGTCGATCAGCAGCGAGTA 675 >seq298 Length=57222 Score = 203 bits (224), Expect = 4e-46 Identities = 336/481 (70%), Gaps = 17/481 (4%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| || ||||| |||||||| || ||||| | |||||||| | || |||||||| Sbjct 37727 CTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCGTTGGA 37668 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| ||||| | |||| | | |||||| | |||||| | ||| Sbjct 37667 TGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATACTGATGCC 37608 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || |||||| ||||||||||| ||||||||| |||||||||||||| |||||||| Sbjct 37607 AATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCCCTC 37548 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||||||||| ||| |||| ||| || || |||||||| ||||| ||| |||||| Sbjct 37547 AATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGCGTGCC 37488 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||| ||||||||||||||||| || || ||| | | |||||| || || || Sbjct 37487 GGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGTGACATGAGCTCATACGT 37428 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 | ||| |||| | || | | || | | ||||| || || || Sbjct 37427 ---GTGCAGTGCCGCCTGGATGTCTTGCTTGT--GAATACCCA-----GC-----GCCAC 37383 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 |||||||| ||| | |||||| ||||| ||||| ||| ||| | ||||| | Sbjct 37382 GCGCATGATCATCTGCTGGGGGCGCTCCACGACCTTTCCGTTCACGCGGAAGAGGTA-GC 37324 Query 1630485 CCGGCGCATG-GTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGG 1630543 || || || | ||| ||| ||| |||||| | |||| || ||||||||| ||||| Sbjct 37323 CCCGCTCAAGCGTCTTGAAGCCGAAGTAGTCGTACTCAAAGTCCCGGTCGTGGATGATGG 37264 Query 1630544 C 1630544 | Sbjct 37263 C 37263 Score = 174 bits (192), Expect = 2e-37 Identities = 337/504 (67%), Gaps = 8/504 (2%) Strand=Plus/Minus Query 1628101 ACAAACTTGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACGAA 1628160 ||||||||||| |||||||| | |||||||| |||||| || |||||||| Sbjct 38227 ACAAACTTGGGGAGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTG 38168 Query 1628161 AACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTG 1628220 ||| | |||||| ||||| |||| ||| |||| || |||||||||||||| Sbjct 38167 TACTCCATAATCTCGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTC 38108 Query 1628221 GTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCC 1628280 | | ||||| | |||||||||| |||||| | ||| |||| ||||| |||||||| Sbjct 38107 GACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCG 38048 Query 1628281 GCGACGATGGCCGACCAGATCTGGCGCGCGGGCAC-GACAGTC---CGCGCGCGGCCCTN 1628336 | | |||||| |||| | ||| | |||| || ||| |||||||| |||| Sbjct 38047 TCCAGGATGGCGAACCACAGCTGCTG----GGCATTGATCGTCTTGCGCGCGCGCCCCTC 37992 Query 1628337 NNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGG 1628396 || || | |||| ||||||||| || ||||| Sbjct 37991 CTTCTCGTACTTCTCGTACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGG 37932 Query 1628397 CGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAG 1628456 ||||| || || || || ||| | ||| | || | || ||| || || Sbjct 37931 GGCCTCATTGGGGCAGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAG 37872 Query 1628457 GTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTT 1628516 || |||||| ||||| |||||||||||||| |||| | ||| ||||||||||| Sbjct 37871 ATCGGGGACCCACAGAGCGTAGAAGAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTGGTT 37812 Query 1628517 CTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAA 1628576 ||| || || || | |||| | ||||||||||||||||||||||||| ||| || Sbjct 37811 CTTGCGCAGCTCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAA 37752 Query 1628577 GGCGCCCTTGCGCTTGCCGCCGCC 1628600 | ||| ||||||||||| || || Sbjct 37751 CGAGCCTTTGCGCTTGCCTCCTCC 37728 Score = 134 bits (148), Expect = 2e-25 Identities = 340/508 (67%), Gaps = 22/508 (4%) Strand=Plus/Minus Query 1626981 CTGGTCGACGGTAAACTGGATGGCGTCGGCGG-CGGGCCTGGTGCGCAGATAGTACATGC 1627039 || ||| ||||| ||||||||||||||||| ||||| | ||||| |||||||| | Sbjct 39125 CTTGTCCACGGTGAACTGGATGGCGTCGGCTTTCGGGCGTCC-GCGCATGTAGTACATAC 39067 Query 1627040 CGGTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGC--GCTCGGGCGT 1627097 | |||||||| || ||| |||||| |||||| ||||| | || ||| ||| Sbjct 39066 CCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCA-GCTTGCTAAT-CGT 39009 Query 1627098 CGCGTCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGC 1627157 || |||||| || | ||| ||||||||||||||| | |||| | || || || Sbjct 39008 CGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATGTAGGCGCCACGGTCCGC 38949 Query 1627158 CGCCATGTCGATGGTGACCCGG--TTGGGC---ACCTCCCACACGGTCTTGAAGATGGCC 1627212 || || ||| | || ||| || || | ||||||||| |||||| | | || Sbjct 38948 CGACAGGTCCA-----ACACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCC 38894 Query 1627213 TTGAGGTCGGGCGGCACCTCGTCGTCGCCAAAGCCCTGCACCGAGCCGTGCGCCGCGACG 1627272 |||| | | ||| | | | || || |||||| ||||| | || | Sbjct 38893 TTGACCTGGTCCGGAA--TGGATTTCACCTT----CTGCACGGAGCCACCGTCAGCCAGA 38840 Query 1627273 AGCCTGTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGG 1627332 | | || ||| | || |||||||| | ||| || | ||||| ||| | |||| Sbjct 38839 ATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATGAGGTAC 38780 Query 1627333 CGGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATG 1627392 ||| || | || || || || | ||||||||||| |||| ||||| ||| Sbjct 38779 TTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTAC 38720 Query 1627393 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 1627452 |||| | ||| ||||||||| ||||| | ||||| || |||||||| | ||| Sbjct 38719 GGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCC 38660 Query 1627453 ACGAGGAGCGAGTTGCGCAGGCCGTGCT 1627480 ||||||||||||||||| | |||||||| Sbjct 38659 ACGAGGAGCGAGTTGCGGATGCCGTGCT 38632 >seq797 Length=10543 Score = 197 bits (218), Expect = 2e-44 Identities = 275/382 (72%), Gaps = 4/382 (1%) Strand=Plus/Minus Query 1573869 GGCGACATGCCCAACCTCTTGCTGGCGGGTCCGCCCGGCACGGGCAAGACCACGAGCATC 1573928 ||| ||||| | |||||| | ||| |||| ||||| || ||||| |||||||| |||||| Sbjct 4452 GGCAACATGACGAACCTCATCCTGTCGGGCCCGCCGGGAACGGGGAAGACCACCAGCATC 4393 Query 1573929 GCGTGTCTGGCGCGTGTCCTCTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAAC 1573988 |||| ||||||| | || | ||| | || | | |||||||||| || |||||| Sbjct 4392 CTGTGTTTGGCGCGCGAACTGCTAGGCACCAGCGTCAAACAGGCCGTGCTGGAGCTCAAC 4333 Query 1573989 GCGTCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGC-CTCCAA 1574047 ||||| || || ||||| ||||| ||||||| || |||||| || | ||| Sbjct 4332 GCGTCCGATGACCGCGGAATCGACACGGTGCGCACGAAGATCAAGATGTTTGCGCAGCAA 4273 Query 1574048 GAGGATCGAC-CTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCC 1574106 ||| ||| ||||| || || ||||||||| | | ||||| ||||| ||||||| Sbjct 4272 AAGG--TGACGCTGCCTCCGGGCCGCCACAAGATTGTGATCCTGGACGAAGCCGACTCGA 4215 Query 1574107 TCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGC 1574166 | || | |||||||| ||||| ||||| ||||||||| | | | ||| ||| Sbjct 4214 TGACAGCCGCGGCCCAACAGGCGCTGCGCCGCACCATGGAGATCTTCTCGGCCACCACGA 4155 Query 1574167 GCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCG 1574226 | || || ||||| ||||||| ||| | | | |||||||| || |||| || ||||| | Sbjct 4154 GGTTCGCGCTGGCCTGCAACAACTCGACTAAGATCATCGAGCCCATCCAGAGCCGCTGTG 4095 Query 1574227 CCATTCTGCGCTTTGTGCGCCT 1574248 |||| || ||||| |||||| Sbjct 4094 CCATCCTCCGCTTCACGCGCCT 4073 >seq178 Length=49325 Score = 154 bits (170), Expect = 2e-31 Identities = 296/431 (69%), Gaps = 4/431 (1%) Strand=Plus/Plus Query 18061 ATGAGCACATTCGGCAAGGTATTTAGGGTCACCACCTTTGGCGAGTCGCACGGGGCGGGC 18120 |||||||| || ||| | || | ||||| |||||||||||||||||| | ||| Sbjct 3897 ATGAGCACCTTTGGCCGCTTCTTCCGCGTCACAACCTTTGGCGAGTCGCACTGCAAGGGT 3956 Query 18121 GTCGGCTGCATCATCGACGGCGTGCCGCCGT-GCATGCCACTGGCCGAGGCCGACATCCA 18179 || ||||||||| | ||||||||||| |||| || || | || | |||||||||||||| Sbjct 3957 GTGGGCTGCATCGTGGACGGCGTGCCCCCGTCGCTTG-CGCTCACGGAGGCCGACATCCA 4015 Query 18180 GCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGCC 18239 ||| ||| | || ||||| || |||||| || || | || || ||| ||||| Sbjct 4016 GCCACAGCTCACGCGCCGCCGCCCCGGCCAGAGCAAGCTCACGACCCCTCGCGACGAGAA 4075 Query 18240 CGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGG 18299 || | || | |||| | ||||| ||||| ||| |||||||||| |||| | | Sbjct 4076 GGACCTGGTGACCATCATGAGCGGCACTGAGAAGGGCTTCACGCTCGGTACGCCGCTGGC 4135 Query 18300 CCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCC 18359 ||||| ||| |||| || ||| ||| || || || ||| | ||||| Sbjct 4136 GCTCTTCGTGCCCAATGAGAACGTGCGCCCCAAGGATTACAAGGAGATGGACGCCGTGCC 4195 Query 18360 GCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCA-TCAAGGCGTCGTCGG 18418 || || |||||||||||||| ||| | |||||||||| | | | | | | Sbjct 4196 CCGCCCGGGCCACGCCGACTACACGTACCAGATGAAGTACGGCACGCGCGCCAGCAGC-G 4254 Query 18419 GCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCG 18478 |||| ||||| | ||||| ||||| | ||||| || | ||||| || |||| Sbjct 4255 GCGGCGGCCGCGCCAGCGCCCGGGAGACTATTGGCCGCGTGGCATCTGGCGCCGTGGCCG 4314 Query 18479 AGAAATGGCTC 18489 ||||||||||| Sbjct 4315 AGAAATGGCTC 4325 Score = 132 bits (146), Expect = 6e-25 Identities = 120/150 (80%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103 |||||| || |||||| || ||||||||| ||||||| ||| | ||||| ||| Sbjct 4740 GAGGACTCCACCGGCGGAGTCGTCACGTGCGTGATCCGCAACGCGCCTGTGGGCCTGGGC 4799 Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163 ||||||||||| |||||||| |||||| ||| || ||||||||| |||| ||||| || Sbjct 4800 GAGCCGTGCTTCGACAAGATGCAGGCCGTGCTGGCGCACGCCATGATGTCCATCCCAGCT 4859 Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTTT 19193 |||||||| |||||||| ||| ||||||| Sbjct 4860 ACCAAGGGCTTCGAGATCGGC-TCGGGTTT 4888 >seq148 Length=55572 Score = 132 bits (146), Expect = 6e-25 Identities = 174/238 (73%), Gaps = 5/238 (2%) Strand=Plus/Plus Query 1178255 GACCGGCCGATCGTGCACCGCGACCTCAAGTCGTCCAACCTGCTCGTCGACGACAACTTC 1178314 || |||||||| ||||||| ||||||||| ||||| || | || ||| | ||||| Sbjct 6112 GAGCGGCCGATTCTGCACCGAGACCTCAAGAGCCCCAACTTGTTGGTGGACAAGAACTTT 6171 Query 1178315 ACAATCAAGGTGGCCGACTTTGGCTTTGCCCGCATCCGCGAGGACAATGC-GACGATGAC 1178373 | || ||| || | ||||||||| | |||||| || | || ||| ||| ||||| Sbjct 6172 AACATTAAGTTGTCAGACTTTGGCCTGGCCCGCGTCAAGGCTCACG-TGCAGACCATGAC 6230 Query 1178374 GCGG---TGCGGCACGCCGGCGTGGACGGCGCCCGAGGTCCTGCGCGGCGAGCGCTACTC 1178430 | | ||||||||| ||||| |||||||||||| ||| || | || ||| | Sbjct 6231 GGGCAACTGCGGCACGGTCCAGTGGATGGCGCCCGAGGTGCTGGGCAACCAGAAGTACAC 6290 Query 1178431 GGAAAAGGCCGACGTCTACTCGTTTGGCGTCGTCATGTGGGAGATCATCACGCGCAAG 1178488 ||| ||||| ||||||| |||||| || ||||||| ||||||||| ||||| || || Sbjct 6291 GGAGAAGGCTGACGTCTTCTCGTTCGGGATCGTCATCTGGGAGATCGTCACGGGCGAG 6348 Score = 118 bits (130), Expect = 1e-20 Identities = 197/284 (69%), Gaps = 3/284 (1%) Strand=Plus/Plus Query 1349432 CGGCCAAGGGCGTCGCCTACCTGCACGGTCTCGACCCGCCCATCGTGCACCGCGACCTCA 1349491 ||||||||||| | | ||||||||| | || | ||| || ||||||| ||||||| Sbjct 6080 CGGCCAAGGGCATGTCGTACCTGCACCACTTTGAGCGGCCGATTCTGCACCGAGACCTCA 6139 Query 1349492 AGAGCGGCAACCTGCTGGTCGACCAAAACTACAACGTCAAGGTGGCCGACTTTGGCCTGG 1349551 ||||| |||| || |||| ||| | |||| ||| | ||| || | ||||||||||||| Sbjct 6140 AGAGCCCCAACTTGTTGGTGGACAAGAACTTTAACATTAAGTTGTCAGACTTTGGCCTGG 6199 Query 1349552 CGCGCATTAAGG---AGGACAACGCCACGATGACCCGCTGCGGCACGCCCTGCTGGACGG 1349608 | ||| | |||| | | | ||| || | | |||||||||| | |||| || Sbjct 6200 CCCGCGTCAAGGCTCACGTGCAGACCATGACGGGCAACTGCGGCACGGTCCAGTGGATGG 6259 Query 1349609 CGCCCGAGGTCATACGCGGCGAGCGCTACGACGAGCGGGCCGACGTCTACTCATTTGGCA 1349668 |||||||||| | || | || ||| ||| ||| ||||||| ||| || || | Sbjct 6260 CGCCCGAGGTGCTGGGCAACCAGAAGTACACGGAGAAGGCTGACGTCTTCTCGTTCGGGA 6319 Query 1349669 TCATCGCGTGGGAGGTGCTCACGCGCCGCCGCCCCTACGACGGC 1349712 || || |||||| | ||||| || | || ||||||||| Sbjct 6320 TCGTCATCTGGGAGATCGTCACGGGCGAGTGTCCGTACGACGGC 6363 >seq440 Length=19183 Score = 125 bits (138), Expect = 9e-23 Identities = 162/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | || ||||||||||| ||||||||||| || || | Sbjct 18411 GCTTGGCCAGCTCACCAGGGAGCATGAGGCGCACGGCCGTCTGGATCTCACGGCTGGACA 18352 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||| |||||| | ||| ||| ||||||||| | | ||||||| |||| | Sbjct 18351 GCGTCGACTTCTTGTTGTAACGCGACAGCTTGCCGGCCTCCGAGGCGATGCGCTCGAAGA 18292 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTG-TTGGAGATGCCCACGTCGGGG 1254521 ||||||||| ||||||||||||| |||||| | | | ||| ||| ||| |||||| Sbjct 18291 TGTCGTTGATGAACGAGTTCATGATCGACAT-GCCGCGCTTGCTGATACCCGTCTCGGGG 18233 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||||| || | ||||||||||||| ||| ||||||||| Sbjct 18232 TGCACTTGACGCAACACCTTGTAGATGTACGTCGAGTACGA 18192 >seq247 Length=71542 Score = 123 bits (136), Expect = 3e-22 Identities = 163/223 (73%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | || ||||||||||| ||||||||||| || || | Sbjct 37326 GCTTGGCCAGCTCACCAGGGAGCATGAGGCGCACGGCCGTCTGGATCTCACGGCTGGACA 37385 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||| |||||| | ||| ||| ||||||||| | | |||| || |||| | Sbjct 37386 GCGTCGACTTCTTGTTGTAACGCGACAGCTTGCCGGCCTCCGAGGCGATACGCTCGAAGA 37445 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACAT--CG-ACTTGTTGGAGATGCCCACGTCGG 1254519 | ||||||| ||||||||||||| |||||| || |||| | ||||||| |||| Sbjct 37446 TATCGTTGATGAACGAGTTCATGATCGACATACCGCGCTTGCT---GATGCCCGTCTCGG 37502 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 |||||||||| ||||||||||||||| | | ||||||||| Sbjct 37503 GGTGCACCTGGCGCAGCACCTTGTAGATGTAGGTCGAGTACGA 37545 >seq279 Length=30826 Score = 122 bits (134), Expect = 1e-21 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 92603 GGCGATCTGGCGCGTGAGGGCCTCCTGCACCTGGAAGCGGTCGGAAAACATGTCGACGAT 92662 ||||||||| |||||| |||||||||||| | ||| ||||| | ||| | Sbjct 11287 GGCGATCTGCTTGGTGAGGCGCTCCTGCACCTGCAGACGGCGCGAAAAGACCTCGCTCAC 11346 Query 92663 GCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGGCCTT 92722 ||||| || |||||| ||||| | | |||| |||| | ||| || | ||| |||| Sbjct 11347 GCGCGCGAGCTTGCTGAGGCCCAGCACTTTGCCGTTGGGGATGTAACCGATGTGCACCTT 11406 Query 92723 GCCCATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGCACGAT 92782 |||| | || |||| || |||||||||||||||||| | | ||||| ||| |||||||| Sbjct 11407 GCCCGTGAACGGCACCATGTGGTGCTCGCACATGGAGTACAGGTCGATGTCCCGCACGAT 11466 Query 92783 CACCATCTCG 92792 ||||||||| Sbjct 11467 GACCATCTCG 11476 >seq78 Length=176312 Score = 107 bits (118), Expect = 2e-17 Identities = 115/148 (78%), Gaps = 8/148 (5%) Strand=Plus/Plus Query 1592150 GACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAG 1592209 ||| |||||||| | || || ||| | ||||| |||||||||||| | ||||||||| Sbjct 154025 GACATCGAGCAGGAGATTCTGTTCGAGCTCATCCTGGCCGCCAACTACATGGACATCAAG 154084 Query 1592210 CCTCTGCTCGATCTTGG-GTGC---AAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCC 1592265 ||||| || ||||| |||| ||| ||||||| |||||| ||||| ||| |||| Sbjct 154085 AGCCTGCTGGA-CTTGGCGTGCGCTAAG---GTGGCCAGCATGATTAAGGGAAAGACGCC 154140 Query 1592266 CGAGGAGATCCGCAAGACCTTTAACATC 1592293 | ||||||||||| |||| || |||||| Sbjct 154141 CCAGGAGATCCGCGAGACGTTCAACATC 154168 >seq663 Length=22143 Score = 102 bits (112), Expect = 1e-15 Identities = 162/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 1178267 GTGCACCGCGACCTCAAGTCGTCCAACCTGCTCGTCGACGACAACTTCACAATCAAGGTG 1178326 ||||||||||||||||||||| ||| |||| | || ||| || |||| || Sbjct 8500 GTGCACCGCGACCTCAAGTCGAAGAACGTGCTGCTAAACCGCAAGTTTCATGCCAAGCTG 8559 Query 1178327 GCCGACTTTGGCTTTGCCCGCATCCGCGAGGACAATGCGACGATGACG--CGGTG-CGGC 1178383 |||||||||| | ||||| | | | ||| | |||||||||| || | ||| Sbjct 8560 AGCGACTTTGGCGTCAGCCGCAAGACCCACGTCAACGAGACGATGACGTCTGGCGTGGGC 8619 Query 1178384 ACGCCGGCGTGGACGGCGCCCGAGGTCCTGCGCGGCGAGCGCTACTCGGAAAAGGCCGAC 1178443 |||| | |||||| ||||||||| || | ||| || |||||||| ||||||||| Sbjct 8620 ACGCTGCTGTGGACCGCGCCCGAGATCATTGAGGGCAAGAAGTACTCGGAGAAGGCCGAC 8679 Query 1178444 GTCTACTCGTTTGGCGTCGTCATGTGGGAGATCATCACGCGCAAGCAGCC 1178493 |||| ||| |||| ||||| ||| ||||| |||| || ||| ||| Sbjct 8680 ATCTATTCGCTTGGAGTCGTGCTGTCAGAGATGGACACGTGCGAGCCGCC 8729 >seq46 Length=73211 Score = 98.7 bits (108), Expect = 1e-14 Identities = 171/245 (70%), Gaps = 9/245 (4%) Strand=Plus/Plus Query 1347608 TCGTCCACCGCGACCTCAAGTCGCTCAACGTGCTCCTCGACGCCAAGTGGAACGCCAAGA 1347667 || ||||||||||||||||||||||||||||||| |||||| | | | || ||| Sbjct 41017 TCATCCACCGCGACCTCAAGTCGCTCAACGTGCTGCTCGACAACCGGCTGCGTGCGAAGC 41076 Query 1347668 TCTCAGACTTTGGCCTCA--CGC-AGTGGTCGGCGCGCGCCCGCACGGCCGACGCCGTGG 1347724 || |||||||| |||| ||| || | ||||| || | | | || ||| ||||| Sbjct 41077 TCAGCGACTTTGGGCTCAGCCGCGAGCGCTCGGCCGACGACACGATGACCAACGGCGTGG 41136 Query 1347725 GCACCGTGCACTGGTCGGCGCCCGAGGTGCTGTCGGCCGACGGCGACGCCAACCTCTTGC 1347784 |||| || ||| ||||||||||| | ||| || |||||| || || | | Sbjct 41137 GCACGCTGTTGTGGACGGCGCCCGAGATCCTG-CG-----CGGCGAGACCTACAGCGAGA 41190 Query 1347785 TGGCCGACGTCTACTCGTTTGGCATCGTCCTGTGGGAGGTGCTCACGCGCCAGAGCCCCT 1347844 ||| ||||| ||||||| | |||||| |||| ||| || |||| | | | |||| Sbjct 41191 AGGCGGACGTGTACTCGTACGCCATCGTGCTGTCCGAGCTGGACACGTGTCTGCCGCCCT 41250 Query 1347845 ACGCG 1347849 |||| Sbjct 41251 TCGCG 41255 >seq89 Length=45905 Score = 96.9 bits (106), Expect = 4e-14 Identities = 100/130 (77%), Gaps = 6/130 (5%) Strand=Plus/Plus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || || ||| | ||||| |||||||||||| | ||||||||| | ||||| || || | Sbjct 464 CTGTTCGAGCTCATCCTGGCCGCCAACTACATGGACATCAAGTCGCTGCTGGACCTGTCG 523 Query 1592228 TG---CAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACC 1592284 || |||| ||||| | ||||||||| ||||| |||||||||||||||||| || Sbjct 524 TGCGCCAAG---GTGGCTACCATGATCAAAGGCAAATCGCCCGAGGAGATCCGCGCCACT 580 Query 1592285 TTTAACATCA 1592294 ||| ||||| Sbjct 581 TTTGGCATCA 590 >seq872 Length=13862 Score = 87.8 bits (96), Expect = 2e-11 Identities = 181/262 (69%), Gaps = 8/262 (3%) Strand=Plus/Minus Query 1178240 TATTTGCACGGGCGCGACCGGCCGATCGTGCACCGCGACCTCAAGTCGTCCAACCTGCTC 1178299 || ||||||| ||| | ||| || | |||||||||||||||||| |||| | || Sbjct 2759 TACTTGCACGCTCGCACGCCGCCTCTCATCCACCGCGACCTCAAGTCGAACAACATCCT- 2701 Query 1178300 GTCGAC-GACAACTTCACAATCAAGGTGGCCGACTTTGGCTTTGCCCGCATCCGCGAGGA 1178358 | ||| ||||| || | ||| | |||||||||| | || | | || Sbjct 2700 GCTGACAGACAAGTTGAAGCCCAAACTCATCGACTTTGGCGTGAGTCGTGGCACTGTAGA 2641 Query 1178359 CAATGCGACGATGAC-GC-GGTG-CGGCACGCCGGCGTGGACGGCGCCCGAGGTCCTGCG 1178415 ||| |||||||| || |||| |||||||||| |||||||| || ||| ||||| Sbjct 2640 CAA---CACGATGACAGCGGGTGTCGGCACGCCGTACTGGACGGCCCCAGAGATCCTGGA 2584 Query 1178416 CGGCGAGCGCTACTCGGAAAAGGCCGACGTCTACTCGTTTGGCGTCGTCATGTGGGAGAT 1178475 ||| |||| ||| |||| |||| ||| | |||||||| ||||| || || |||| | Sbjct 2583 AGGCAAGCGATACACGGAGCAGGCGGACATTTACTCGTTCGGCGTGGTGCTGACGGAGCT 2524 Query 1178476 CATCACGCGCAAGCAGCCCTAC 1178497 |||| ||||| |||||| Sbjct 2523 GGACACGTGCAAGATCCCCTAC 2502 >seq363 Length=27155 Score = 86.0 bits (94), Expect = 8e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 1726961 GACCCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTT 1727020 || ||||||||||| |||||| || ||| |||||||| |||||||| ||||| ||||| Sbjct 13329 GATCCGTCGAGGTCCGGGTCGTTGATCAGACCCTTCCATCCGACGGTGGTGCGAGGCTTC 13270 Query 1727021 TCGACATAGGCGCGCATGAC 1727040 |||| ||| |||||||||| Sbjct 13269 TCGAAGTAGACGCGCATGAC 13250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106766626339180