Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278225.1_202015-09-02] 4,540 sequences; 41,842,896 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq797 212 1e-48 seq298 199 6e-45 seq2965 194 3e-43 seq247 156 7e-32 seq440 152 8e-31 seq279 143 4e-28 seq148 132 8e-25 seq312 98.7 2e-14 seq663 96.9 5e-14 seq78 96.9 5e-14 seq46 96.9 5e-14 seq17 96.9 5e-14 seq753 93.3 7e-13 seq363 86.0 1e-10 seq282 86.0 1e-10 >seq797 Length=10543 Score = 212 bits (234), Expect = 1e-48 Identities = 336/480 (70%), Gaps = 4/480 (1%) Strand=Plus/Minus Query 2018916 CCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTGGGCAACGAGCACGCC 2018975 |||||| | || |||||||| ||| |||| | ||| | ||||||||| || | Sbjct 4542 CCGTGGGTGGAGAAGTACCGGCCGCGCATGCTGGCGGACGTGGTGGGCAACCGCGACACG 4483 Query 2018976 GTTGCCTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAACCTCTTGCTGGCGGGC 2019035 | || || |||| |||| | ||||||||| | |||||| | ||| ||||| Sbjct 4482 ATCGCGAGTCTGCAGGCCATGGCGCAAGCGGGCAACATGACGAACCTCATCCTGTCGGGC 4423 Query 2019036 CCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGCGCG 2019095 ||||| || ||||| |||||||| |||||| ||| ||||||||| || | ||| | Sbjct 4422 CCGCCGGGAACGGGGAAGACCACCAGCATCCTGTGTTTGGCGCGCGAACTGCTAGGCACC 4363 Query 2019096 GCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTG 2019155 || | | |||||||||| || ||||| ||||| || || ||||| | ||| ||| Sbjct 4362 AGCGTCAAACAGGCCGTGCTGGAGCTCAACGCGTCCGATGACCGCGGAATCGACACGGTG 4303 Query 2019156 CGTAGAATCATCAAGCA--TCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGCCACA 2019213 || | | |||||| | ||| | ||| | || ||||| || |||||||||| Sbjct 4302 CGCACGAAGATCAAGATGTTTGCGCAGCAAAAGGTGACG--CTGCCTCCGGGCCGCCACA 4245 Query 2019214 AGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGAT 2019273 || | | ||||| || || ||||||| | || | |||||||| ||||| || || Sbjct 4244 AGATTGTGATCCTGGACGAAGCCGACTCGATGACAGCCGCGGCCCAACAGGCGCTGCGCC 4185 Query 2019274 CGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGA 2019333 |||||||| | | | | ||| ||| |||| |||||||||||||||| ||| | | Sbjct 4184 GCACCATGGAGATCTTCTCGGCCACCACGAGGTTCGCGCTGGCCTGCAACAACTCGACTA 4125 Query 2019334 TGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACG 2019393 | ||||||| || |||||||||| || |||||| | ||||| ||||||| |||||| Sbjct 4124 AGATCATCGAGCCCATCCAGAGCCGCTGTGCCATCCTCCGCTTCACGCGCCTACCCGACG 4065 >seq298 Length=57222 Score = 199 bits (220), Expect = 6e-45 Identities = 348/505 (69%), Gaps = 15/505 (3%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| |||||||| |||||||| || ||||| | |||||||| | | |||||||| Sbjct 37727 CTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCGTTGGA 37668 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||| ||||| | |||| | || |||||| | |||||| | ||| Sbjct 37667 TGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATACTGATGCC 37608 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || |||||| |||||||||| |||||||| || ||||| ||||| |||||||| Sbjct 37607 AATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCCCTC 37548 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||||||||| ||| |||| ||| ||| || |||||||| ||||| |||| |||||| Sbjct 37547 AATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGCGTGCC 37488 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 ||| || ||||||||||||||||| ||| | || || |||||| ||| || || Sbjct 37487 GGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGTGACATGAGCTCATACGT 37428 Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899 | ||| |||| | |||||| | | | | ||||| || || || Sbjct 37427 ---GTGCAGTGCCGCCTGGATGTCTTG--CTTGTGAATACCCA-----GC-----GCCAC 37383 Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAGGA 2073959 |||||||||||| | |||||| ||||| ||||| || ||| | |||||| Sbjct 37382 GCGCATGATCATCTGCTGGGGGCGCTCCACGACCTTTCCGTTCACGCGGAAGAGGTAGCC 37323 Query 2073960 CCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATGGC 2074019 ||| || ||| | ||| ||||| ||| | | ||| || |||||| |||||| Sbjct 37322 CCGCTCAAGCGTCTTGAAGCCGAAGTAGTCGTACTCAAAGTCCCGGTCGTGGATGATGGC 37263 Query 2074020 GGCGTCGAGGGCCTCCTTGTGCGCC 2074044 | || || | ||||||||| || Sbjct 37262 CGAGTTAAGCTCGTCCTTGTGCTCC 37238 Score = 159 bits (176), Expect = 5e-33 Identities = 289/429 (67%), Gaps = 0/429 (0%) Strand=Plus/Minus Query 2071584 CTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTT 2071643 |||| ||||| |||| ||| | ||||| |||||||||||||| | |||| Sbjct 38156 CTCGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTT 38097 Query 2071644 GACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATGGC 2071703 | | |||||||||| ||||||| | ||| | |||||||| |||||||| | |||||| Sbjct 38096 GGCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGC 38037 Query 2071704 CGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNNNNNNNNNNNN 2071763 |||| | || | || | || | | |||||| |||| Sbjct 38036 GAACCACAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCTC 37977 Query 2071764 NNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCA 2071823 | || | || || || |||| |||||||| || ||||| ||||| ||||| Sbjct 37976 GTACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCA 37917 Query 2071824 AAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTCCACAG 2071883 || || ||| | |||| | |||| || ||| ||||| ||| |||||| Sbjct 37916 GAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAG 37857 Query 2071884 GCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAG 2071943 |||| ||||| |||||||| |||| | ||| |||||||||||||| ||| || || Sbjct 37856 AGCGTAGAAGAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGCTCCAG 37797 Query 2071944 CCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTT 2072003 | |||| | ||||||||||||||||||||||||| ||| || | ||| |||||||| Sbjct 37796 GAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTT 37737 Query 2072004 GCCGCCGCC 2072012 ||| || || Sbjct 37736 GCCTCCTCC 37728 >seq2965 Length=1496 Score = 194 bits (214), Expect = 3e-43 Identities = 190/243 (78%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 || || ||||||| ||||||||||||||| |||||| |||||||||||||||| ||| Sbjct 1270 ACACCAGCCTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGC 1211 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCG----CACCC 794008 ||||||| |||||||| ||||||||| | ||| || || ||| | ||||| Sbjct 1210 GAGATCATATCCATCCAGTCGAACGGGTT---CTTCACGTTGTAGATCTTGGATGCACCC 1154 Query 794009 GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 || || |||||||||||||| ||||| || ||||||||||||||||| || | ||| Sbjct 1153 -AGTGAGTACAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTT 1095 Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 ||||||||| ||| ||||||| ||||| ||||| || ||||| | ||| ||| | || || Sbjct 1094 CATGCCGATCAGCTCCACGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGC 1035 Query 794129 CTC 794131 || Sbjct 1034 GTC 1032 Score = 192 bits (212), Expect = 9e-43 Identities = 240/327 (73%), Gaps = 3/327 (1%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| || ||||| | ||||| |||| || || |||||||||||||||||| Sbjct 949 CCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTC 890 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||||| ||||| |||||||| || |||||||| |||||||| || Sbjct 889 TTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTCCACGGCGGCGAAC 830 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | | || ||||| | | | | | | | || |||||| | |||||| Sbjct 829 GCCAGCAGACGCTCCGGGTAGGA--CGAAACACGAGG-GTCACACCACTTGAGCGCCCAG 773 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 ||||| ||| ||| | || | ||| |||||||| || | | ||| |||||||| Sbjct 772 CGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAGCAAGTGATCCTTCTCC 713 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 || | |||||||| ||| |||||||| || |||||||| ||| ||||||||||| ||| Sbjct 712 ACGGCGTCCTTGATGTACGTGTCGATCAGCAGCGAGTACACCTCCGAGTGGATGTTCTCG 653 Query 794641 ATGGCGATCTGGAAGCCATAAAAGCAG 794667 ||||||||||||||||| || |||||| Sbjct 652 ATGGCGATCTGGAAGCCGTAGAAGCAG 626 Score = 158 bits (174), Expect = 2e-32 Identities = 190/254 (75%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || ||||| ||||| || ||||| ||||||||||| |||||||||| Sbjct 622 GCCTCCGGCACTTGCACCTCATTGCTGAAGTTCATCGCCAGGTTCTCGTTCACGATGCCG 563 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 |||||||| ||||| || || || ||||||||||| ||||| ||||||| ||| | || Sbjct 562 TCGCTGGCAGCGAAGAATGCTAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTCAGG 503 Query 796270 GAGACCCAGTGGACCGTGTCG-GCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 |||||| | |||| || || ||||| | ||||||||| ||||| || || || Sbjct 502 TTCCCCCAGTCCTTCAGGTCGTGCACC-AGGTCCAGCTCCTCGGCCGTCCAGAACGACGC 444 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGT--TGGTAGCGGATGGGGAACAGAACAAAG 796386 ||| ||||| |||||||||| ||| | ||| || | |||| |||||||| || || Sbjct 443 CTCCGCCTTCTTGTACATCTGCCACA--CGTCGTGCTCCTGGATCGGGAACAGCACGAAC 386 Query 796387 CGATTGGGGTTCTC 796400 || || |||||||| Sbjct 385 CGGTTCGGGTTCTC 372 >seq247 Length=71542 Score = 156 bits (172), Expect = 7e-32 Identities = 190/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||| || |||||||| || ||||| || || |||||| ||||||| || || | | Sbjct 37287 TGAACTTAGTCACGGCCTTCGTGCCCTCCGACACAGCGTGCTTGGCCAGCTCACCAGGGA 37346 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||||||||| ||||||||||| ||| || | ||| |||||| | Sbjct 37347 GCATGAGGCGCACGGCCGTCTGGATCTCACGGCTGGACAGCGTCGACTTCTTGTTGTAAC 37406 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| ||||||||| | | |||| || |||| || ||||||| |||||||||| Sbjct 37407 GCGACAGCTTGCCGGCCTCCGAGGCGATACGCTCGAAGATATCGTTGATGAACGAGTTCA 37466 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||||||| |||||||||||||| |||||||||| Sbjct 37467 TGATCGACATACCGCGCTTGCTGATGCCCGTCTCGGGGTGCACCTGGCGCAGCACCTTGT 37526 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| ||||||||| Sbjct 37527 AGATGTAGGTCGAGTACGA 37545 >seq440 Length=19183 Score = 152 bits (168), Expect = 8e-31 Identities = 189/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||| || |||||||| || ||||| || ||||||||| ||||||| || || | | Sbjct 18450 TGAACTTAGTCACGGCCTTCGTGCCCTCCGACACGGCGTGCTTGGCCAGCTCACCAGGGA 18391 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||||||||| ||||||||||| ||| || | ||| |||||| | Sbjct 18390 GCATGAGGCGCACGGCCGTCTGGATCTCACGGCTGGACAGCGTCGACTTCTTGTTGTAAC 18331 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| ||||||||| | | ||||||| |||| |||||||||| |||||||||| Sbjct 18330 GCGACAGCTTGCCGGCCTCCGAGGCGATGCGCTCGAAGATGTCGTTGATGAACGAGTTCA 18271 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||| ||| ||||||||||| || | |||||||| Sbjct 18270 TGATCGACATGCCGCGCTTGCTGATACCCGTCTCGGGGTGCACTTGACGCAACACCTTGT 18211 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | | | ||||||||| Sbjct 18210 AGATGTACGTCGAGTACGA 18192 >seq279 Length=30826 Score = 143 bits (158), Expect = 4e-28 Identities = 224/318 (70%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 118582 CGCCCAGGAGGACGCGCGTGACCGTGTTTGACCCGTTCTTGCGCACGCCGCGCATGCACA 118641 ||||||| | | || |||||| ||| | | ||| |||| |||||||||||| || Sbjct 11160 CGCCCAGCACGGAGCTCGTGACGGTGCTGGCGCCGCTCTTCTCGACGCCGCGCATGACCA 11219 Query 118642 CGCACATGTGGAGGCCCTCGAGCACGACGCCGACGCCGCGCGCGCCCG-TGACCTCGCTG 118700 |||||||||| | |||||| ||| ||| | ||||| | | || | |||| | || Sbjct 11220 TGCACATGTGGGTGGCCTCGATCACAACGGCCACGCC-CTTGGGCTCAATGACGCCCATG 11278 Query 118701 ATGCTCTCGGCGATCTGGCGCGTGAGCGCCTCCTGCACCTGGAAGCGGTCCGAGAGCATG 118760 ||| ||||||||| ||||| |||||||||||| | ||| ||| | | Sbjct 11279 ATGGCGGTGGCGATCTGCTTGGTGAGGCGCTCCTGCACCTGCAGACGGCGCGAAAAGACC 11338 Query 118761 TCGACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGCGGGCAGGTAGCCCACG 118820 ||| | ||||| || |||||| ||||| | | |||| ||| | ||| || | | Sbjct 11339 TCGCTCACGCGCGCGAGCTTGCTGAGGCCCAGCACTTTGCCGTTGGGGATGTAACCGATG 11398 Query 118821 TGCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCAATGTCG 118880 ||| ||||||| | || |||| || |||||||||||||||||| | | ||| ||||| Sbjct 11399 TGCACCTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATGGAGTACAGGTCGATGTCC 11458 Query 118881 CGCACGGTCACCATCTCG 118898 |||||| | ||||||||| Sbjct 11459 CGCACGATGACCATCTCG 11476 >seq148 Length=55572 Score = 132 bits (146), Expect = 8e-25 Identities = 174/238 (73%), Gaps = 5/238 (2%) Strand=Plus/Plus Query 1217382 GACCGACCCATTGTGCACCGCGACCTCAAGAGCAGCAACCTGTTGGTCGACGACAATTTC 1217441 || || || ||| ||||||| |||||||||||| |||| ||||||| ||| | || || Sbjct 6112 GAGCGGCCGATTCTGCACCGAGACCTCAAGAGCCCCAACTTGTTGGTGGACAAGAACTTT 6171 Query 1217442 ACGATCAAGGTGGCCGACTTTGGCTTTGCCCGCATCCGCGAGGACAATGC-GACGATGAC 1217500 | || ||| || | ||||||||| | |||||| || | || ||| ||| ||||| Sbjct 6172 AACATTAAGTTGTCAGACTTTGGCCTGGCCCGCGTCAAGGCTCAC-GTGCAGACCATGAC 6230 Query 1217501 ---CCGGTGCGGCACGCCGGCGTGGACGGCGCCCGAGATCCTGCGCGGCGAGCGCTACTC 1217557 | ||||||||| ||||| |||||||||| | ||| || | || ||| | Sbjct 6231 GGGCAACTGCGGCACGGTCCAGTGGATGGCGCCCGAGGTGCTGGGCAACCAGAAGTACAC 6290 Query 1217558 GGAAAAGGCCGACATCTACTCTTTCGGCATCGTCATGTGGGAGATCATCACGCGCAAG 1217615 ||| ||||| ||| ||| ||| ||||| |||||||| ||||||||| ||||| || || Sbjct 6291 GGAGAAGGCTGACGTCTTCTCGTTCGGGATCGTCATCTGGGAGATCGTCACGGGCGAG 6348 >seq312 Length=24842 Score = 98.7 bits (108), Expect = 2e-14 Identities = 114/150 (76%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 679834 AGCCCATCGAGCGAGCGGATGCGCGACAGCGCCACGTAGGCCTGGCCACAGTCAAAGATG 679893 ||||| || |||||||| | ||| ||||| ||||| |||||||||||| | || || | | Sbjct 5021 AGCCCTTCCAGCGAGCGCACGCGGGACAGTGCCACATAGGCCTGGCCAAACTCGAACACG 4962 Query 679894 C-CG-CTCATCGAGATGACAGCGCGGTCCAACGACATGCCCTGGCACTTGTGGATGGTCA 679951 | || | ||| | |||||| ||| ||||||| ||||||| |||||||||| | | Sbjct 4961 CGCGACAGATC--CAACACAGCGGCGTCGAACGACAGTCCCTGGCTCTTGTGGATGCTGA 4904 Query 679952 TGGCCCACGCCAGCAGCAGTGGCACCTGCC 679981 ||||||| || ||| || |||| ||||| Sbjct 4903 TGGCCCAGGCTAGCGCCAACGGCAGCTGCC 4874 >seq663 Length=22143 Score = 96.9 bits (106), Expect = 5e-14 Identities = 163/231 (71%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 1217394 GTGCACCGCGACCTCAAGAGCAGCAACCTGTTGGTCGACGACAA-TTTCACGATCAAGGT 1217452 |||||||||||||||||| | ||| || || | || ||| ||||| | |||| | Sbjct 8500 GTGCACCGCGACCTCAAGTCGAAGAACGTGCTGCTAAACCGCAAGTTTCATGC-CAAGCT 8558 Query 1217453 GGCCGACTTTGGCTTTGCCCGCATCCGCGAGGACAATGCGACGATGAC--CCGGTGCGG- 1217509 | |||||||||| | ||||| | | | ||| | ||||||||| | || | || Sbjct 8559 GAGCGACTTTGGCGTCAGCCGCAAGACCCACGTCAACGAGACGATGACGTCTGGCGTGGG 8618 Query 1217510 CACGCCGGCGTGGACGGCGCCCGAGATCCTGCGCGGCGAGCGCTACTCGGAAAAGGCCGA 1217569 ||||| | |||||| |||||||||||| | ||| || |||||||| |||||||| Sbjct 8619 CACGCTGCTGTGGACCGCGCCCGAGATCATTGAGGGCAAGAAGTACTCGGAGAAGGCCGA 8678 Query 1217570 CATCTACTCTTTCGGCATCGTCATGTGGGAGATCATCACGCGCAAGCAGCC 1217620 |||||| || | || |||| ||| ||||| |||| || ||| ||| Sbjct 8679 CATCTATTCGCTTGGAGTCGTGCTGTCAGAGATGGACACGTGCGAGCCGCC 8729 >seq78 Length=176312 Score = 96.9 bits (106), Expect = 5e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 || || ||| | ||||| |||||||||||| | ||||||||| ||| || || |||| | Sbjct 154043 CTGTTCGAGCTCATCCTGGCCGCCAACTACATGGACATCAAGAGCCTGCTGGACTTGGCG 154102 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 ||| | ||||||| | | || ||||| ||| ||||| |||| |||||| |||| || Sbjct 154103 TGCGCTAAGGTGGCCAGCATGATTAAGGGAAAGACGCCCCAGGAGATCCGCGAGACGTTC 154162 Query 2035749 AACATC 2035754 |||||| Sbjct 154163 AACATC 154168 >seq46 Length=73211 Score = 96.9 bits (106), Expect = 5e-14 Identities = 170/239 (71%), Gaps = 8/239 (3%) Strand=Plus/Plus Query 1217358 GGCG-TGGCCTATTTGCACGGGCGCGA-CCGACCCATTGTGCACCGCGACCTCAAGAGCA 1217415 |||| |||| ||| ||||||| ||| | |||| || | ||||||||||||||| Sbjct 40982 GGCGCTGGCGTATCTGCACGGCCGCCAGCCGATT-ATCATCCACCGCGACCTCAAGTCGC 41040 Query 1217416 GCAACCTGTTGGTCGACGACAATTTCACGATC-AAGGTGGCCGACTTTGGCTTTGCCCGC 1217474 |||| || || ||||| || | || | ||| | ||||||||| | |||| Sbjct 41041 TCAACGTGCTGCTCGACAACCGGCTG-CGTGCGAAGCTCAGCGACTTTGGGCTCAGCCGC 41099 Query 1217475 ATCCGCGAGGACAATGCGACGATGACC--CGGTGCGG-CACGCCGGCGTGGACGGCGCCC 1217531 ||| || | | | ||||||||| ||| | || ||||| | ||||||||||||| Sbjct 41100 GAGCGCTCGGCCGACGACACGATGACCAACGGCGTGGGCACGCTGTTGTGGACGGCGCCC 41159 Query 1217532 GAGATCCTGCGCGGCGAGCGCTACTCGGAAAAGGCCGACATCTACTCTTTCGGCATCGT 1217590 |||||||||||||||||| |||| || ||||| ||| | ||||| | || |||||| Sbjct 41160 GAGATCCTGCGCGGCGAGACCTACAGCGAGAAGGCGGACGTGTACTCGTACGCCATCGT 41218 Score = 89.7 bits (98), Expect = 8e-12 Identities = 159/230 (69%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 1249577 GCCTATCTGCACGCGCTCGACCCGCCCGTCGTCCACCGCGATCTCAAGAGCAGCAACCTG 1249636 || |||||||||| | | | ||| || |||||||||| |||||| |||| || Sbjct 40989 GCGTATCTGCACGGCCGCCAGCCGATTATCATCCACCGCGACCTCAAGTCGCTCAACGTG 41048 Query 1249637 CTGGTCGACGACGAGTACAATGTCAAGGTGGCCGACTTTGGTCTCGCGCGCATCCGCGAG 1249696 ||| ||||| || | || ||| | ||||||||| ||| ||| ||| | Sbjct 41049 CTGCTCGACAACCGGCTGCGTGCGAAGCTCAGCGACTTTGGGCTCAGCCGCGAGCGCTCG 41108 Query 1249697 GACAATGCCACCATGACG--CGGTGCGG-CACGCCGGCGTGGACGGCGCCCGAGGTCATC 1249753 | | | | ||| ||||| ||| | || ||||| | |||||||||||||||| || | Sbjct 41109 GCCGACGACACGATGACCAACGGCGTGGGCACGCTGTTGTGGACGGCGCCCGAGATCCTG 41168 Query 1249754 CGCGGCGAGCGCTACGACGAGCGCGCCGACGTCTACTCGATCGGCATCGT 1249803 ||||||||| |||| |||| || ||||| |||||| || |||||| Sbjct 41169 CGCGGCGAGACCTACAGCGAGAAGGCGGACGTGTACTCGTACGCCATCGT 41218 >seq17 Length=79875 Score = 96.9 bits (106), Expect = 5e-14 Identities = 171/243 (70%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 1249560 CGGCGGCCACGGGCGTCGCCTATCTGCACGCGCTCGACCCGCCCGTCGTCCACCGCGATC 1249619 || || ||| | || || | || |||||| |||| |||||||| ||| | ||||| |||| Sbjct 4237 CGTCGCCCATGCGC-TCACGTACCTGCACTCGCTGGACCCGCCAGTCCTGCACCGTGATC 4179 Query 1249620 TCAAGAGCAGCAACCTGCTGGTCGACGACGAGTACAATGTCAAGGTGGCCGACTTTGG-- 1249677 ||||| || ||| | ||| || | ||||| | | ||||| | |||||||| Sbjct 4178 TCAAGTCCAAGAACATCCTGCTCAGCTCCGAGTTGGAAGCGAAGGTCACGGACTTTGGCA 4119 Query 1249678 TCTCGCGCGCATCCGCGAGGACAATGCCACCATGACG--CGGTGC-GGCACGCCGGCGTG 1249734 |||| |||| | | ||||| |||||||| ||||| |||||| || ||| Sbjct 4118 TCTCCCGCGAAA--GGATTGACAAG---ACCATGACTGCCGGTGTAGGCACGTCGCTGTG 4064 Query 1249735 GACGGCGCCCGAGGTCATCCGCGGCGAGCGCTACGACGAGCGCGCCGACGTCTACTCGAT 1249794 || |||||||||||| || |||||| | |||||||| |||||| ||| |||| | Sbjct 4063 GATGGCGCCCGAGGTGATGATGGGCGAGAGGTACGACGACAAGGCCGACATCTTCTCGTT 4004 Query 1249795 CGG 1249797 ||| Sbjct 4003 CGG 4001 >seq753 Length=12651 Score = 93.3 bits (102), Expect = 7e-13 Identities = 160/227 (70%), Gaps = 14/227 (6%) Strand=Plus/Minus Query 1249584 TGCACGCGCTCGACCCGCCCGTCGTCCACCGCGATCTCAAGAGCAGCAACCTGCTGGTCG 1249643 ||||| || | || ||| || | ||||||||||||||| || ||| | ||| || Sbjct 1822 TGCACTCGTTGGAGCCGGTGGTGCTGCACCGCGATCTCAAGTCCATGAACATCCTGCTCA 1763 Query 1249644 AC---GACGAGTACAATGTCAAGGTGGCCGACTTTGGTCTCGCGCGCATCCGCGAGGACA 1249700 || |||| | | || |||| | | ||||||||| || |||||| | ||| Sbjct 1762 ACTCGGACGGGGA---TGCCAAGCTCACGGACTTTGGTGTCTCGCGCAAATG----GACG 1710 Query 1249701 ATGC-CACCATGACG--CGGTGCGG-CACGCCGGCGTGGACGGCGCCCGAGGTCATCCGC 1249756 || |||||||||| ||| | || ||||| | ||||| ||||||||||||||| Sbjct 1709 GTGGACACCATGACGGCCGGCGTGGGCACGCGGCGGTGGATGGCGCCCGAGGTCATGATG 1650 Query 1249757 GGCGAGCGCTACGACGAGCGCGCCGACGTCTACTCGATCGGCATCGT 1249803 ||| ||||||||||| |||||||| ||| |||| |||| |||| Sbjct 1649 GGCAAGCGCTACGACACAAGCGCCGACATCTTCTCGTTCGGTGTCGT 1603 Score = 86.0 bits (94), Expect = 1e-10 Identities = 170/244 (70%), Gaps = 21/244 (9%) Strand=Plus/Minus Query 1249571 GGCGTCG-CCTATCTGCACGCGCTCGACCCGCCCGTCGTCCACCGCGATCTCAAG---AG 1249626 ||||| | |||| || ||| |||||||||| || | |||||||| |||||| || Sbjct 4029 GGCGTTGACCTACCTCCACTCGCTCGACCCCAAGGTGCTGCACCGCGACCTCAAGTCGAG 3970 Query 1249627 CAGCAACCTGCTGGTCGACGACGAGTACAATGTCAAGGTGGCCGACTTTGGTCTCGCGCG 1249686 | || | ||||| ||| | ||| ||| |||| | | |||||||| |||| || Sbjct 3969 GAACATCTTGCTG-TCGTC--CGAACTGGATGCCAAGCTCTCGGACTTTGGGGTCGCCCG 3913 Query 1249687 CATCCGCGAGGACAA-TGC--CACCATGAC----GCGGTGCGGCACGCCGGCGTGGACGG 1249739 || | ||| | | || |||||| | |||| |||||| || |||| || Sbjct 3912 CA------AATACAGCTTCAGCAGCATGACCGCAGGGGTG-GGCACGTCGCTCTGGATGG 3860 Query 1249740 CGCCCGAGGTCATCCGCGGCGAGCGCTACGACGAGCGCGCCGACGTCTACTCGATCGGCA 1249799 | ||||||||||| | |||||| || ||||||| |||||||| ||| |||| ||||| Sbjct 3859 CCCCCGAGGTCATGCTCGGCGACCGGTACGACGCCAGCGCCGACATCTTCTCGTTCGGCG 3800 Query 1249800 TCGT 1249803 |||| Sbjct 3799 TCGT 3796 >seq363 Length=27155 Score = 86.0 bits (94), Expect = 1e-10 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 2175306 GACCCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTT 2175365 || ||||||||||| |||||| || ||| |||||||| |||||||| ||||| ||||| Sbjct 13329 GATCCGTCGAGGTCCGGGTCGTTGATCAGACCCTTCCATCCGACGGTGGTGCGAGGCTTC 13270 Query 2175366 TCGACATAGGCGCGCATGAC 2175385 |||| ||| |||||||||| Sbjct 13269 TCGAAGTAGACGCGCATGAC 13250 >seq282 Length=26331 Score = 86.0 bits (94), Expect = 1e-10 Identities = 156/223 (70%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 1217397 CACCGCGACCTCAAGAGCAGCAACCTGTTGGTCGAC-GACAATTTCACGATCAAGGTGGC 1217455 |||||||| |||||| || ||| | ||| || | |||| || | | ||||||| Sbjct 9291 CACCGCGATCTCAAGTCCAAGAACATTTTGCTCACCCGACAGTTAGAGGC-CAAGGTGAT 9233 Query 1217456 CGACTTTGGCTTTGCCCGCATCCGCGAGGACAATGCGACGATGAC--CCGGTGCGG-CAC 1217512 |||||||||| | ||| || |||||| || ||||| | |||| || ||| Sbjct 9232 CGACTTTGGCGTGAGTCGCGGACGTCTGGACAAC---ACCATGACGGCGGGTGTGGGCAC 9176 Query 1217513 GCCGGCGTGGACGGCGCCCGAGATCCTGCGCGGCGAGCGCTACTCGGAAAAGGCCGACAT 1217572 ||| ||||||||||| ||||| || || | || ||||||||| | |||||||| Sbjct 9175 TCCGTTCTGGACGGCGCCGGAGATTCTAGAGGGGAAACGATACTCGGAACAAGCCGACAT 9116 Query 1217573 CTACTCTTTCGGCATCGTCATGTGGGAGATCATCACGCGCAAG 1217615 ||||| |||||| |||| ||| |||| | |||| ||||| Sbjct 9115 TTACTCCTTCGGCGTCGTGCTGTCGGAGCTGGACACGTGCAAG 9073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915763459493060