Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278225.1_202015-09-02] 4,540 sequences; 41,842,896 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq40 104 2e-17 seq264 86.0 5e-12 >seq40 Length=72588 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||||||||| || ||||| || || || || ||||| || || Sbjct 19629 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 19688 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || || ||||| || | |||| | ||||| || ||||| Sbjct 19689 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 19748 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| |||||||| | ||| || || || | || | | ||| ||| | || || Sbjct 19749 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACG 19808 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || || || || || || |||||||| Sbjct 19809 TCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 19855 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 |||||||||||| || ||||| || || || || ||||| || || | |||||| Sbjct 19412 ACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 19471 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || ||||| || | |||| | ||||| || ||||| || ||||| || Sbjct 19472 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTT 19531 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| || || || | || | | ||| ||| | || || || || || || Sbjct 19532 GTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGAT 19591 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || || || || || |||||||| Sbjct 19592 GGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 19627 >seq264 Length=48314 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||||||||| || ||||| || || || || ||||| || || Sbjct 15678 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15737 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || || || |||||||| | |||| | ||||| || ||||| Sbjct 15738 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 15797 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | ||| || || || | || | | ||| || | || || Sbjct 15798 ATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 15857 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || ||||| || || || || ||||| |||||||| Sbjct 15858 TCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 15904 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||||||||| || ||||| || || || || ||||| || || Sbjct 15906 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15965 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || || || |||||||| | |||| | ||||| || ||||| Sbjct 15966 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 16025 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | ||| || || || | || | | ||| || | || || Sbjct 16026 ATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 16085 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | || || || ||||| || || || || || || |||||||| || Sbjct 16086 TCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTT 16135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385197885340140