Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278225.1_202015-09-02] 4,540 sequences; 41,842,896 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq298 179 4e-40 seq264 95.1 1e-14 seq40 95.1 1e-14 >seq298 Length=57222 Score = 179 bits (198), Expect = 4e-40 Identities = 569/869 (65%), Gaps = 25/869 (3%) Strand=Plus/Minus Query 147459 GGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATTT 147517 ||| | ||||||||| ||||| || ||| ||| |||| || || |||||| || || | Sbjct 38213 GGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACG-TGTACTCCATAATCT 38155 Query 147518 CGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGC 147577 || ||||| |||||| | || || | || ||||| || || || ||| Sbjct 38154 CGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGG 38095 Query 147578 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA---A 147634 |||||| ||| | |||||| |||| |||| ||||| | |||| || | ||| | Sbjct 38094 CCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGA 38035 Query 147635 ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCT 147694 ||| ||| | ||| || | | || || ||| ||||| || |||||| || Sbjct 38034 ACCA---CAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCT 37978 Query 147695 CGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGAC 147754 |||||| ||| ||||||||||| |||| ||| || ||||| || || || | Sbjct 37977 CGTACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGC 37918 Query 147755 ACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACA 147814 | | || |||| || ||| ||| | || || ||| |||||||| || ||||||| Sbjct 37917 AGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACA 37858 Query 147815 GCGCGTACATAAGATCGCGCGCTT--TGCAA-TCCTCGGCGCCCATGTTGCGTTTCAAAT 147871 | ||||| | || |||||||| |||| || | | || | ||||| || | Sbjct 37857 GAGCGTAGAAGAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCG---CAGCT 37801 Query 147872 TAAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTA 147930 || | | | | | | |||||||||||| || || | ||||| ||| | || ||||| Sbjct 37800 CCAGGAACTCGA-ACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTG 37742 Query 147931 CGCTT---TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGT 147987 ||||| ||| |||||||| |||| ||| || ||| || || || | || |||||| Sbjct 37741 CGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGG 37682 Query 147988 TCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCG 148047 | ||| | | | ||||| ||| ||| | |||| ||| || | | | Sbjct 37681 ATGATCCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTG 37622 Query 148048 TGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAA---T 148104 |||| | | |||||| || ||| | |||| || ||| ||||| | || | | Sbjct 37621 TGCATACTGATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACT-GCTTGAGCGT 37563 Query 148105 GTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATT 148164 ||||| | ||||| || || ||||| | | | | |||| |||||||| ||| Sbjct 37562 GTCGT--AAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGC 37505 Query 148165 TGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGA 148224 |||||| | |||| || || || || ||||| ||||||||||||| || | || Sbjct 37504 TGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGT 37445 Query 148225 CTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCG 148284 ||| | |||||| | | || | | |||||| | |||||| |||||||| Sbjct 37444 GACATGAGCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCC 37385 Query 148285 ACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 |||||||||| ||| ||||| || || || Sbjct 37384 ACGCGCATGATCATCTGCTGGGGGCGCTC 37356 >seq264 Length=48314 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 15911 ACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 15970 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||| ||||| || || | | || || ||||| || || || || ||||| Sbjct 15971 GCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCC 16030 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || |||||| || |||| | || | | || | ||||||||| || | Sbjct 16031 TTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAA 16090 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || || |||| ||| || | ||| |||||||| Sbjct 16091 GGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 16132 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 15683 ACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 15742 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||| ||||| || || | | || || ||||| || || || || ||||| Sbjct 15743 GCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCC 15802 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || |||||| || |||| | || | | || | ||||||||| || | Sbjct 15803 TTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAA 15862 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||| || || |||| ||| || | || ||||||||| Sbjct 15863 GGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 15905 >seq40 Length=72588 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| ||||| || | | ||||| || || |||||||||||||||| || Sbjct 19634 ACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 19693 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| |||||||| || || || || ||||| Sbjct 19694 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCC 19753 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||||| || |||| | || | | || | |||||||| || | Sbjct 19754 CTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAG 19813 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACTTATTAG 132133 ||| | || || || |||| || || | ||| |||||||||| | |||| Sbjct 19814 CGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGATCTTTTAG 19865 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | ||||| || || |||||||||||||||| || || Sbjct 19413 CGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCG 19472 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || |||| |||| |||||||| || || || || ||||| || || Sbjct 19473 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTG 19532 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || |||| | || | | || | |||||||| || | ||| | Sbjct 19533 TCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATG 19592 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || |||| || || | ||| ||||||||| Sbjct 19593 GTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 19628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476584152314400