Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278225.1_202015-09-02] 4,540 sequences; 41,842,896 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq344 257 2e-63 >seq344 Length=43319 Score = 257 bits (284), Expect = 2e-63 Identities = 471/679 (69%), Gaps = 16/679 (2%) Strand=Plus/Minus Query 146908 AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGC 146967 ||||| ||| || ||||| |||||||| || || || |||||||| || | ||| Sbjct 17228 AGCTGCTTTTGAAGAGGCTCAACGTGGTTCAGATACACATGCGCGTCGCCGATAACGTGA 17169 Query 146968 ACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAG 147027 | ||| || || || || | || | ||| || ||||| | || ||||||| |||| Sbjct 17168 ATAAATTCACCAGGTTTCAACCCTGCCACTTGTGCCACTAGACGCGTAAGCAGCGCGTAG 17109 Query 147028 CTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAC 147087 || || ||||| || || || || || |||||||| |||| | |||||||| ||| ||| Sbjct 17108 CTTGCAATGTTAAACGGCACACCAAGACCCATGTCGGCCGAGCGCTGGTACATCTGACAC 17049 Query 147088 GAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147 || | ||||||||| |||||||| || ||||| | ||||||||||| ||||| ||||| Sbjct 17048 GACAACTCCCCGTCCGCCACGTAGAATTGGCAGAACATGTGGCACGGTGGCAGTGCCATC 16989 Query 147148 GCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTC 147207 || ||| || || |||||||| || || | ||| | ||| | | | |||||| | Sbjct 16988 TCGTTCAGATCAGCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCGTCGGGTTCGTA 16929 Query 147208 TTAATCTCTTCGATAACC-CACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCC 147266 | || | || ||| || | ||||||||||||||||| || ||||| || Sbjct 16928 CGCAGCTTGTGAATCACCTCAGC-AAGCTGGTCCACGCCCTGTCCAGTGTAGTCCGT-GT 16871 Query 147267 GCA-GTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGT 147325 ||| |||| ||||||||| ||||| || | ||||||||||||||| || || || |||| Sbjct 16870 GCATGTCCGTGTACCTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACAGGTCCGAGGT 16811 Query 147326 CGCCGGGCTTTCTGTGCGA---GAAGCC-CGCCCGCTTGAGAAACTCGGGGGACCCGTGG 147381 | || | | | |||| || || || | | | | | |||| ||||||| | Sbjct 16810 CACC---CACTTCGCGCGACTGCAATCCTCGACTG-TCCAAATACTCTCGGGACCCATTC 16755 Query 147382 GCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATG 147441 ||||||||||| | |||| ||| | | | |||| ||| | ||| Sbjct 16754 CCGTCCCAGATGTGAATGTCCTTCTGTTGCAGCGTGTGCGCGCTCGTGTCGCCGCTAATG 16695 Query 147442 AACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGG 147501 ||||| |||||||||||| || || | ||| || || | |||||| || ||||| ||| Sbjct 16694 AACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGG 16635 Query 147502 AAC---TGGTCCCTCAGCGAATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTG 147558 ||| | || ||||| ||| | ||| | |||||||| |||| |||||| ||| Sbjct 16634 AACACGTTCTCTCTCAGACTGAACCGCATCTGTGCTCCAAACACCGACAACGTGCCAGTG 16575 Query 147559 CCCGTCCTGTCCTCCCTGC 147577 ||||| | || ||||| || Sbjct 16574 CCCGTGCGGT-CTCCCCGC 16557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583454887056000