Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278225.1_202015-09-02] 4,540 sequences; 41,842,896 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq344 107 2e-18 >seq344 Length=43319 Score = 107 bits (118), Expect = 2e-18 Identities = 229/339 (68%), Gaps = 5/339 (1%) Strand=Plus/Plus Query 40991 CGATCCCGATAG-CCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGA 41049 ||| ||||| | ||| || || | |||| ||||||||||| | || | | || Sbjct 16931 CGAACCCGACGGACCGCCGGATCGTGTTGTCTGCGTGGAACCCTGCTGATCTGAACGAGA 16990 Query 41050 TGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCAT 41109 ||||| ||||||| || || |||| || || || ||||| | || || |||| | Sbjct 16991 TGGCACTGCCACCGTGCCACATGTTCTGCCAATTCTACGTGGCGGACGGGGAGTTGTCGT 17050 Query 41110 GTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTT 41169 |||| |||| || | || | |||||||| || || || ||||||||||| || || | Sbjct 17051 GTCAGATGTACCAGCGCTCGGCCGACATGGGTCTTGGTGTGCCGTTTAACATTGCAAGCT 17110 Query 41170 ATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTC 41229 | || ||||| ||| | | | ||||| || | || ||||||||||||||| || Sbjct 17111 ACGCGCTGCTTACGCGTCTAGTGGCACAAGTGGCAGGGTTGAAACCTGGTGAATTTATT- 17169 Query 41230 ACACGTTA--GGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACT 41287 ||||||| || || | ||| | || | || ||| | ||||| | | | || || Sbjct 17170 -CACGTTATCGGCGACGCGCATGTGTATCTGAACCACGTTGAGCCTCTTCAAAAGCAGCT 17228 Query 41288 GACACGAAAACCTAGACCATTTCCAACGCTACTTATTAA 41326 || || ||| | ||||| |||||||| | ||||| Sbjct 17229 TACGCGTTCACCGCGGCCATTCCCAACGCTTCACATTAA 17267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397434008262700