Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278225.1_202015-09-02] 4,540 sequences; 41,842,896 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq344 132 4e-26 >seq344 Length=43319 Score = 132 bits (146), Expect = 4e-26 Identities = 428/665 (64%), Gaps = 17/665 (3%) Strand=Plus/Minus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 || || || ||||||| || || || || || || || | ||| | ||| || || Sbjct 17216 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCGCCGATAACGTGAATAAATTCACCA 17157 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 |||| | ||| | || || |||| | ||| || || | |||||| || |||||| Sbjct 17156 GGTTTCAACCCTGCCACTTGTGCCACTAGACGCGTAAGCAGCGCGTAGCTTGCAATGTTA 17097 Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827 || ||||| || || |||||||| | || | |||||| | ||| ||||| | ||| ||| Sbjct 17096 AACGGCACACCAAGACCCATGTCGGCCGAGCGCTGGTACATCTGACACGACAACTCCCCG 17037 Query 29828 TCGCTCACGTAAAACTGACA---CATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAG 29884 || |||||| || || || |||| |||||||| || || ||||| || Sbjct 17036 TCCGCCACGTAGAATTGGCAGAACATG---TGGCACGGTGGCAGTGCCATCTCGTTCAGA 16980 Query 29885 TCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TG 29941 || |||||||| ||| ||| | ||| || | ||| ||||| | | | || Sbjct 16979 TCAGCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCGTCGGGTTCGTACGCAGCTTG 16920 Query 29942 AGGTCCACGGCGTTTTGCA-GCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNN 30000 | ||| | ||| |||| ||||| ||| || | |||||| | Sbjct 16919 TGAATCACCTCA----GCAAGCTGGTCCACGCCCTGTCCAGTGTAGTCCGTGTGCATGTC 16864 Query 30001 NNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTC 30060 | ||||| | ||||||||| ||||| || ||||| ||||| ||| | Sbjct 16863 CGTGTACCTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACAGGTCCGAGGTCACCCAC 16804 Query 30061 TTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGAT 30120 ||| | || || || | |||||||| | |||| ||| || || |||||||||| Sbjct 16803 TTCGCGCGACTGCAATCCTCGACTGTCCAAATACTCTCGGGACCCATTCCCGTCCCAGAT 16744 Query 30121 CTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAG 30180 | | |||||| ||| | | | | ||| || || | |||||||||||| Sbjct 16743 GTGAATGTCCTTCTGTTGCAGCGTGTGCGCGCTCGTGTCGCCGCTAATGAACCACAGCAG 16684 Query 30181 CTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAA-ACTGTCCC 30238 ||||||| | ||| | ||| || || | |||||||||||| || ||||| || || | Sbjct 16683 CTCCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAACACGTTCTC 16624 Query 30239 T-TGAGGCCGTACCTCGCCTGAGACCCAAACATGGACAAGACTCCCGTGCCTGTCCTGTC 30297 | | || | | ||| | ||| | ||||||| ||||| || ||||| || | ||| Sbjct 16623 TCTCAGACTGAACCGCATCTGTGCTCCAAACACCGACAACGTGCCAGTGCCCGTGCGGTC 16564 Query 30298 TCCCC 30302 ||||| Sbjct 16563 TCCCC 16559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406140726482440