Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278235.1_202015-09-02] 4,533 sequences; 41,964,659 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq289 271 2e-67 seq339 143 7e-29 >seq289 Length=41845 Score = 271 bits (300), Expect = 2e-67 Identities = 631/947 (67%), Gaps = 6/947 (1%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || |||||||| ||||| || | | || || || || | ||| ||| |||| || Sbjct 22093 TTTACGCACGCGACGCCCACGCTCTTTAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCG 22152 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || || || ||| ||||||| || || ||||| || | ||||| || ||| | Sbjct 22153 TGTTTCCTGCTGGCCATGCAGGACGACTCGATTGAGGGCATTTACGACACGCTCAAGCAG 22212 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || || |||||| || || || ||||| | || ||||| | || || Sbjct 22213 TGCGCGTGCATCTCCAAGTGGGCCGGAGGTATTGGCATCAGTATGCACAACATCCGCGCC 22272 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 |||||| ||||| |||||||| |||| || || ||| | | |||||||| | Sbjct 22273 ACGAACAGCTACATCCGCGGCACGAACGGATCATCCAACGGGATCATCCCCATGCTGAGG 22332 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 || || | | || || | || || |||||||| ||||| ||||||||||| |||| Sbjct 22333 GTCTTCAATGACACGGCCCGCTATGTGGACCAGGGAGGAGGCAAGCGCAAAGGCTCGTTC 22392 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || || || ||||| || ||||| | || ||||| || ||||| || || ||| Sbjct 22393 GCCATCTACCTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGAGCTGCGCAAGAAC 22452 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| || || || || || ||||| || || ||||| | || | Sbjct 22453 CACGGCAACGAGCTGCACCGCGCGCGCGACCTCTTCTACGCTCTGTGGGTCCCCGATCTG 22512 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAATGTC 364024 || |||||||| ||||| || | | | || ||| || || ||||| | || | Sbjct 22513 TTCATGAAGCGTGTGGAAGC--GAACGGCAAGTGGAGCCTTTTCTGCCCCAATGAGGCCC 22570 Query 364025 CAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGG 364084 | || || | ||| ||||| ||||| | | |||| ||||| ||||| || || Sbjct 22571 CCGGACTCTACGAGTGCTGGGGCGACGAGTTCGAGACTCTGTACGAGAAGTACGAGAAGG 22630 Query 364085 AGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGC 364144 |||| || || ||||| || || ||| |||| ||||| |||||| |||| ||| Sbjct 22631 AGGGGCGCGCGCGCAAGACGATCAATGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCGC 22690 Query 364145 AGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACC 364204 |||||||||| || || | ||| ||||||| || || |||||||||||| |||| Sbjct 22691 AGATTGAGACGGGCGTGCCGTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCGAACC 22750 Query 364205 AGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCG 364264 ||||| |||| || || || | ||||||| | || ||||||||| || ||||| Sbjct 22751 AGCAGAACCTCGGCACGATCCGCTCGAGCAACTTGTGCTGCGAGATTATGGAGTACACGT 22810 Query 364265 CTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAG 364324 | ||||| ||| || || || ||||| ||||| | || || || |||||| | | Sbjct 22811 CGCCCGATGAGGTGGCGGTGTGCAACCTGGCGTCTGTGGCCCTCCCCAAGTTTGTGGAGG 22870 Query 364325 ATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCG 364384 |||| || || ||||| | || || || || ||| | | || | || | Sbjct 22871 ATGGAGTGTTCAACTACCAGAAGCTGTACGAGGTGACCAAGGTGGTGACCCGGAACTTGA 22930 Query 364385 ACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCGT 364443 ||||||| || ||| || || || || | | || || || || || ||||| Sbjct 22931 ACAAGGTCATTGACGTCAACTACTA-CCCCGTGGAGGAGGCGCGCAAGTCCAACATGCGC 22989 Query 364444 CATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTAT 364490 || |||||| ||||| |||| || ||||| ||||| || | ||||| Sbjct 22990 CACCGCCCGGTTGGTATTGGCGTCCAGGGTCTCGCGGATGCATTTAT 23036 >seq339 Length=43237 Score = 143 bits (158), Expect = 7e-29 Identities = 319/471 (68%), Gaps = 6/471 (1%) Strand=Plus/Plus Query 111482 CGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTA 111541 ||||| ||||| |||||||| || ||||| || || |||||||| ||||| || || Sbjct 17098 CGAAGTGGGTGACCTCGGACCTGTCTACGGCTTCCAGTGGCGCCATTTTGGCGCCAGGTA 17157 Query 111542 CAAAACCATGCACGACTCA-TATGATTCACAGGGAACTGATCAA-TTACAGAATGTCATT 111599 || ||||||| || | || | |||||| || || || | || || ||| Sbjct 17158 CACGGACATGCAC-ACGGACTACACTGGACAGGGCGTGGACCAGCTTGCTGAG-GTGATT 17215 Query 111600 GATCAAATTAAGAAC-AACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAA 111658 | ||| | | || ||||| || || || || | || ||| |||||||| Sbjct 17216 CA-CAAGCTGCGTACGAACCCGACGGACCGCCGGATCGTGTTGTCTGCGTGGAACCCTGC 17274 Query 111659 TGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGA 111718 || || | | |||||||| ||||| || || | | ||||| || || || || Sbjct 17275 TGATCTGAACGAGATGGCACTGCCACCGTGCCACATGTTCTGCCAATTCTACGTGGCGGA 17334 Query 111719 CGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTT 111778 |||| | | || || || ||||| ||||| || || || || ||||||||||| ||||| Sbjct 17335 CGGGGAGTTGTCGTGTCAGATGTACCAGCGCTCGGCCGACATGGGTCTTGGTGTGCCGTT 17394 Query 111779 TAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACC 111838 ||| |||||||| ||||| || ||||| | || | || || | || | ||||| Sbjct 17395 TAACATTGCAAGCTACGCGCTGCTTACGCGTCTAGTGGCACAAGTGGCAGGGTTGAAACC 17454 Query 111839 GGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACT 111898 |||||||| |||||||||||||| || |||||||| || |||||| |||| | || Sbjct 17455 TGGTGAATTTATTCACGTTATCGGCGACGCGCATGTGTATCTGAACCACGTTGAGCCTCT 17514 Query 111899 TAAAACACAGTTGAAGCGCAAACCATACGATTTCCCAACGATTCATATCAA 111949 | ||| ||| | | ||| ||| ||||||||| |||| || || Sbjct 17515 TCAAAAGCAGCTTACGCGTTCACCGCGGCCATTCCCAACGCTTCACATTAA 17565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303277902444806