Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278235.1_202015-09-02] 4,533 sequences; 41,964,659 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq289 266 4e-66 seq3008 187 3e-42 seq61 98.7 1e-15 >seq289 Length=41845 Score = 266 bits (294), Expect = 4e-66 Identities = 1125/1754 (64%), Gaps = 76/1754 (4%) Strand=Plus/Minus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 ||||||||| |||||||||||||||| ||||||||| || | ||||| || | || ||| Sbjct 23715 GTAGTACATACCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAGCTT 23656 Query 113662 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 113721 | | || || | ||| | ||||| ||| || ||| || || Sbjct 23655 GCTAATCGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATGTAGGCGCC 23596 Query 113722 ACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 113781 ||| ||||||| || || | ||| ||||| |||||| |||||||| || |||| Sbjct 23595 ACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTT 23536 Query 113782 GTTCTTAATATCATCTGGGATA---TCCACGATATTTTGGATGGAGCCACCCGCCTTGAC 113838 | ||| | | || || || | ||| || || | ||||||||| | | Sbjct 23535 CTCCTTGACCTGGTCCGGAATGGATTTCACC---TTCTGCACGGAGCCACCGTCAGCCAG 23479 Query 113839 CATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATG 113898 || | | || || | ||||| || | || | || |||| || ||| | Sbjct 23478 AATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATGAGGTA 23419 Query 113899 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTA 113958 ||| || || | |||||||| || || ||| | || || || | |||||| Sbjct 23418 CTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTA 23359 Query 113959 TGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGC 114018 ||||| | | |||||||||| ||||| || || || || || || |||||||| || || Sbjct 23358 CGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGC 23299 Query 114019 CATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTC 114078 || ||| || ||| |||| || | | | | | |||||||| || |||| || Sbjct 23298 CACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGCCCAATC 23239 Query 114079 GTAGTTG-----AG-CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGA 114132 | | || | || | ||| ||||| || ||||||| |||||| | | Sbjct 23238 CCACAAGCCCGAAGACGGGGTGACGCCC---CACATGTCGAACTGGAAGATACCCTTGCT 23182 Query 114133 GGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGC 114192 ||| |||||||||| || |||||||| |||||| | |||| | || | || | Sbjct 23181 GGCAGGCGATCCCTGGAACGTCTCGTACGGGCCC---AGCTCC------TTGGCGATCTC 23131 Query 114193 C-TCGAGGGCT--------GCGTGATACATTGTCTCAAAAATGCGAGCATTCAT--TGCC 114241 | |||||| || |||| || || ||||| || ||| ||||| || Sbjct 23130 CATCGAGGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATG------TTCATGTTGAG 23077 Query 114242 TT---GGCCTCGTCGGAA-TCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGA 114295 || || || | || || ||||| ||| || | |||||| ||||||||||| Sbjct 23076 TTCACGGGCTTGCGGGCTCTCGAACGCATAGTT--CATGAGGATAAATGCATCCGCGAGA 23019 Query 114296 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG 114355 || ||||| || | |||| ||||| || | ||| || ||||| || || ||||||| Sbjct 23018 CCCTGGACGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCTCCACG 22959 Query 114356 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 114415 || || | || || || ||| | || | || ||| || ||||| || | || Sbjct 22958 GGGTAGTAGTTGACGTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTGGTCACCTCG 22899 Query 114416 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 114475 | ||||| | ||| | || | || | || | ||| |||| || ||||| | Sbjct 22898 TACAGCTTCTGGTAGTTGAAC-----ACTC-CATCCTCCACAAACTTGGGGAGGGCCACA 22845 Query 114476 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 114535 |||||||| || ||||| | |||||| |||||||| ||||| || ||| Sbjct 22844 GACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCAC 22785 Query 114536 AAATTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 114592 || || ||| || ||||| | ||||| || || ||||| ||| ||| Sbjct 22784 AAGTTG---CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCG 22728 Query 114593 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 114652 |||||||| |||||| | ||| |||||||| | || | | || || || ||| Sbjct 22727 TCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCA- 22669 Query 114653 ACATCGGCGGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTA 114708 || | || | |||| | | | ||| || |||||||||| ||||||||| ||| Sbjct 22668 -CAGCTGCTG--GGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCTCGTA 22612 Query 114709 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 114768 || | || ||||| || ||| | ||| |||| || || |||| || |||||||| Sbjct 22611 CAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAGAA 22552 Query 114769 GAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGC 114828 || ||| | || | | || |||||||||||||| || || |||| ||| ||||| Sbjct 22551 AAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGC 22492 Query 114829 TGAGAAGAGATCCCGACAGC-GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 114887 ||||||| || || || | || | || | || || || |||| ||||| | Sbjct 22491 GTAGAAGAGGTCGCGCGCGCGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGCTCCAGGA 22433 Query 114888 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---AC 114944 | || | | || ||||||||||| |||||||| | |||| || || || || | Sbjct 22432 ACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGC 22373 Query 114945 GACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATAC 115004 || |||||| ||||| | || ||| |||| || || | ||||| || ||||| | Sbjct 22372 CTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCC 22313 Query 115005 CATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGT 115064 | | ||| || || || || || || || |||| | || | || || Sbjct 22312 CGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATAC 22253 Query 115065 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 115124 || |||||||| || |||||||| ||||| |||||||| | |||| || |||| | Sbjct 22252 TGATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAA 22193 Query 115125 TCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTG 115184 | || || |||||||| ||| | || | ||||| || ||||| || || | | Sbjct 22192 TGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCG 22133 Query 115185 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTA 115243 | || || ||||| ||||| || || |||||||| | || | || | || ||||| Sbjct 22132 GCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGA-ACATCTGTGACATGAGC 22074 Query 115244 TCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATA 115303 || || || | || | || | ||||||| | ||||||||| | || || ||||| Sbjct 22073 TCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCCACGCGCATG 22014 Query 115304 AACATGTATTGGGG 115317 | ||| | ||||| Sbjct 22013 ATCATCTGCTGGGG 22000 >seq3008 Length=2101 Score = 187 bits (206), Expect = 3e-42 Identities = 372/538 (69%), Gaps = 11/538 (2%) Strand=Plus/Minus Query 125748 CCAGC-TTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 125806 ||||| ||| ||| || || || ||||||||||||||||| ||||| || | || | Sbjct 1267 CCAGCCTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAG 1208 Query 125807 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG--GCACCCCAATCT 125864 || | ||||| | || || |||||||| ||| | || | | |||||| | | Sbjct 1207 ATCATATCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCC-AGTGA 1149 Query 125865 GTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATAC 125924 || || || || || | ||| |||| ||||||| |||| | |||||||||| | Sbjct 1148 GTAC-AGCAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGC 1090 Query 125925 CGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCC 125984 |||| || | ||||||| ||| | |||| | | |||||| |||| || || | Sbjct 1089 CGATCAGCTCCACGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCAC 1030 Query 125985 GCACGATGGCGTGAATGGTGTCCACCC-CAGGTCTATTGCGCAAAGTCTTGAAGA-GTTC 126042 ||||||| ||||| | | | | || ||| | | || ||| || | | | | Sbjct 1029 GCACGATCGCGTGCACGCGGCTCTCCGGCAGCT-TGTTCACCAACTTCGAGTACATGAGG 971 Query 126043 CACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 126102 |||| | || || ||| | |||||||| ||| |||||| || |||||||||| ||| Sbjct 970 CACG-CGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAG 912 Query 126103 TCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAA 126162 || |||||||| || |||||||| | |||||| || | || || |||||||||||||| Sbjct 911 ACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAA 852 Query 126163 GATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGAC-TTTGTGT 126221 || |||||||| |||||||| | |||||||| | |||| || || | || Sbjct 851 AATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGA-CGAAACACGAGGGT 793 Query 126222 CAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 || ||||||| | |||||| | ||||| ||||| | ||||||| |||| ||| || Sbjct 792 CACACCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 735 >seq61 Length=176229 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 172763 AGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCG 172822 || |||||||| | ||||| || || || | || || || ||||| ||||||||| Sbjct 103675 AGCTGCGCCACAGTCGCATCACGCACGTTCAGAAGTTTGCCGCGAAGAGGAAACACACCG 103734 Query 172823 TAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 172882 || |||||||| |||||||| | |||||||| || || || | ||| || ||||||||| Sbjct 103735 TACTGATCACGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACCC 103794 Query 172883 TCCGTCACGATGAGCGTACACT 172904 || |||| || |||| |||| Sbjct 103795 TCAGTCAAAATCAGCGAGCACT 103816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597319752451640