Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278235.1_202015-09-02] 4,533 sequences; 41,964,659 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq671 120 1e-22 >seq671 Length=29535 Score = 120 bits (132), Expect = 1e-22 Identities = 381/588 (65%), Gaps = 12/588 (2%) Strand=Plus/Plus Query 65973 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 66032 || || |||||||||||||| |||||| || || ||| | |||||| || | Sbjct 24087 CGAGTGGTGGAGATCTACGGCCCTGAGAGCTCTGGCAAGACGACGTTGGCACTGAGCTGC 24146 Query 66033 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCC---GCCTACATCGACGCCGAACATTCT 66089 | || | || || ||| ||| ||| | |||| |||||| || || || || Sbjct 24147 ATTGCGGAGGCTCAAAAGACCGAGGGCGGGGTGTGTGCCTTCATCGATGCTGAGCACGCT 24206 Query 66090 CTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAG 66149 | || | | |||||| ||| || || || || | ||| || || |||| Sbjct 24207 ATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGACATTGACGCGCTGTACGTCTCGCAG 24266 Query 66150 CCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTT 66209 || ||| | || || | || ||||| |||| ||| ||| || ||||| | ||| Sbjct 24267 CCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGACACGCTCATCCGATCTGGAGCGGTG 24326 Query 66210 TCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGAC 66269 | || | || ||||| ||||||||| || |||||||| || ||||| || || || Sbjct 24327 GACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTGCCGCGTGCCGAGCTTGAGGGCGAG 24386 Query 66270 ATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTG 66329 || || ||| ||| | | ||||| || || | ||| || || |||||||||| Sbjct 24387 ATGGGAGACCAGCAGATTGCGCTGCAGGCGCGATTAATGAGCCAAGCTCTGCGCAAGCTC 24446 Query 66330 ACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAG 66389 || || || | ||| ||||| || | | |||| ||| | ||| ||||| Sbjct 24447 ACGGGGTCGCTGTCCAAGTCCAACTGCACCATTATCTTCCTGAACCAGATCCGCCAGAAG 24506 Query 66390 ATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTC 66449 | |||| | || ||| | |||| ||| | ||||| | || |||||| Sbjct 24507 GTGGGCATTAT---CTTCGGATCTCCTGAGGTCACGTCGGGTGGCACAGCGTTGCGCTAT 24563 Query 66450 TACGCCTCGGTGCGTATGGATGT---CCGCAGGATCGCCACCGAGAAGGAAGGCGATGAG 66506 ||||| || ||||| |||| | ||||| || || | | ||||||||||| || Sbjct 24564 TACGCGTCCGTGCGCCTGGACATTCGCCGCAAGACGGCTATC---AAGGAAGGCGACCAG 24620 Query 66507 GCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCG 66554 |||||||||| ||| ||||||||| | |||||||||||||||| Sbjct 24621 ATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAGAACAAGCTGGCG 24668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242457004495436