Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278235.1_202015-09-02] 4,533 sequences; 41,964,659 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq289 206 3e-48 seq280 143 3e-29 seq3008 105 8e-18 >seq289 Length=41845 Score = 206 bits (228), Expect = 3e-48 Identities = 1155/1818 (64%), Gaps = 68/1818 (4%) Strand=Plus/Minus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||||||||| ||||| || |||||| ||||| | ||||| || | || ||| Sbjct 23714 TAGTACATACCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAGCTTG 23655 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACCA 109533 || ||||| | || | ||||| |||||| ||| ||| | ||| Sbjct 23654 CTAATCGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATGTAGGCGCCA 23595 Query 109534 CGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAA 109593 || || |||| || ||| | | ||| || | || ||||| || ||||||||| Sbjct 23594 CGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTC 23535 Query 109594 TTCTTGATATCATCGGGAATG---TCCACGATGTTTTGAATAGAGCCACCAGCCTTCACC 109650 | ||||| | || |||||| | ||| || || | |||||||| | || Sbjct 23534 TCCTTGACCTGGTCCGGAATGGATTTCACC---TTCTGCACGGAGCCACCGTCAGCCAGA 23478 Query 109651 ATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGC 109710 || | | || ||| || ||||| || | || | || || | | || | | Sbjct 23477 ATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATGAGGTAC 23418 Query 109711 TTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAG 109770 ||||| || | || |||||||| || ||| ||| ||| ||||| | |||||| Sbjct 23417 TTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTAC 23358 Query 109771 GGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCC 109830 || |||| ||||||||||||| | || || || || || || |||||||| |||||| Sbjct 23357 GGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCC 23298 Query 109831 ATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCA 109890 | ||| || ||| |||| || | | | | || ||| | || ||||||| Sbjct 23297 ACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGCCCAATCC 23238 Query 109891 TAACGACCACTAA-ATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGC 109949 | | | | | || | || | || |||||| || || | | ||||| Sbjct 23237 CA-CAAGCCCGAAGACGGGGTGACGCC---CCACATGTCGAACTGGAAGATACCCTTGCT 23182 Query 109950 AGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGC 110009 ||||| || |||| ||| ||||||||| ||| ||| ||| | ||| || | Sbjct 23181 GGCAGGCGATCCCTGGAACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTCCATCGAGGT 23122 Query 110010 CTCTAGTGCCGCATGATACATAGTCTCAAAAAT----ATGAGCA-TTCATGAG---GCGA 110061 ||| | | || | || || ||||| || || ||| | |||| | | ||| Sbjct 23121 CTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACGGGCTTGCGG 23062 Query 110062 GACTCTTCACAGTCGAAGGGA-AGACCACAAAGAATAAACACATCCGCTAGACCCTGAAC 110120 | |||| |||| | | || || | || |||| ||||||| |||||||| || Sbjct 23061 G-CTCT-------CGAACGCATAGTTCATGAGGA-TAAATGCATCCGCGAGACCCTGGAC 23011 Query 110121 ACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAA 110180 || | ||||| ||||| || |||||| || || || || |||||||| | Sbjct 23010 GCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCTCCACGGGGTAGTA 22951 Query 110181 GTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTT 110240 |||| ||| |||||| || | ||| ||||| ||| || | || | || || Sbjct 22950 GTTGACGTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTGGTCACCTCGTACAGCTT 22891 Query 110241 GTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAG 110300 | ||| | |||| | |||| ||| | |||||||| || | |||||| || Sbjct 22890 CTGGTAGTTGAACACTCCATCCTCC------ACAAACTTGGGGAGGGCCACAGACGCCAG 22837 Query 110301 ATTGCACACAGAAGTCTCGTCTTTGTCG--GTGTATTCCAAAATTTCCGTACACAAGTTG 110358 |||||||| | ||| || | || ||||| |||| ||| || ||||||||| Sbjct 22836 GTTGCACACCGCCACCTCATCG--GGCGACGTGTACTCCATAATCTCGCAGCACAAGTTG 22779 Query 110359 ---GAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTA 110415 || | | || || | ||||| ||| ||||| ||| |||| || ||||| Sbjct 22778 CTCGAGCGGATCGTG---CCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTG 22722 Query 110416 TAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCG 110475 || |||||| | || || || || |||| | | || ||||| ||| || | Sbjct 22721 TACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCA--CAGCT 22664 Query 110476 GC--GGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACA-AGT 110530 || ||| || || |||| ||| | || |||| ||||||||| ||||| ||| Sbjct 22663 GCTGGGCATTGATCGTCTTGCGC--GCGCGCCCCTCCTTCTCGTACTTCTCGTACAGAGT 22606 Query 110531 CCTCAAATTCCTGTCCGTA-CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGG 110589 | || || || | || | ||| || | || || |||| | ||| ||||| ||| Sbjct 22605 C-TCGAACTCGTCGCCCCAGCAC-TCGTAGAGTCCGGGGGCCTCATTGGGGCAGAAAAGG 22548 Query 110590 GACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAG 110649 ||| || || | | || || | |||||||||||| || || | ||||| || || Sbjct 22547 CTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGTAG 22488 Query 110650 AAAAGGTCACG-GCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTC 110708 || ||||| || || | || || | | || ||||| ||| ||||||| || || Sbjct 22487 AAGAGGTCGCGCGCGCGGTGCAGCT-CGTTGCCGTGGTTCTTGCGCAGCTCCAGGAACTC 22429 Query 110709 CATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGA---CGACC 110765 | | || | |||||| || || || |||| |||| || || || || | || Sbjct 22428 GAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCTCC 22369 Query 110766 CGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATC 110825 |||||| |||||||| || ||| ||||||||||||| ||||| || || || || | Sbjct 22368 TCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCGTT 22309 Query 110826 GGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCAT 110885 |||| || || || || | || | || |||| || |||| ||| ||| || Sbjct 22308 GGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATACTGAT 22249 Query 110886 ACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACC 110945 |||||||| || |||||||| || || |||| |||| || | ||||| || Sbjct 22248 GCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCC 22189 Query 110946 ATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGT 111005 |||||||| || ||| |||| | || || || || |||| ||| ||||| ||||| Sbjct 22188 CTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGCGT 22129 Query 111006 TCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT-TGGGACATCTTGTTGT 111064 || || || ||||| || || ||||| || | || | || | || ||||| | | Sbjct 22128 GCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGA-ACATCTGTGACATGAGCTCAT 22070 Query 111065 ATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACA 111124 | |||| ||||| | | | |||| ||||||||| | || || ||||||| || Sbjct 22069 ACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCCACGCGCATGATCA 22010 Query 111125 TATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGA--AGGTAACTCTTCTCTAG 111182 | | || || || | | |||||| | ||||| || ||||| | | ||| || Sbjct 22009 TCTGCTGGGGGCGCTCCACGACCTTTCCGT--TCACGCGGAAGAGGTAGCCCCGCTCAAG 21952 Query 111183 GGTCTTGAGACCAAAGTA 111200 ||||||| || ||||| Sbjct 21951 CGTCTTGAAGCCGAAGTA 21934 >seq280 Length=48508 Score = 143 bits (158), Expect = 3e-29 Identities = 325/482 (67%), Gaps = 15/482 (3%) Strand=Plus/Plus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| ||||| || || || | || | |||||||||||| | ||||| Sbjct 3286 ATCTGCCGGTCGAATCGACCGGGACGCAGGATGGCCTTGTCAAGAATATCGGCGCGGTTC 3345 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | |||| || || | || |||| | || |||||| ||||| || || Sbjct 3346 GTACCAGCAAGCACCACCACACC---CTCACTCGAGTTGAAACCATCCATCTCCACCAGC 3402 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTC 11673 |||||||||| ||| | ||||||||| || ||| | | | | |||| ||||| Sbjct 3403 AGCTGGTTGAGCGTGTTTTCACGCTCGTCATTGCCGC-CGGAGAAGTTGCCCTT-GCTTC 3460 Query 11674 TTAC-----CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG 11728 | | | ||||| ||||| ||||||||||| || || || || ||| || || | Sbjct 3461 GTGCACGGGCCACAGCATCAATTTCATCGATGAACACAATGCATGGAGCGTTCGCGCGAG 3520 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 ||| | ||| || |||||||||||| | || ||||| |||||||| || | ||| | Sbjct 3521 CCTCCTTGAACAGGTCACGTACACGCGAGGGACCCACACCAACGAACATTTCGATGAAAT 3580 Query 11789 TTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 || |||| | ||||| ||| || || | | ||| ||||| |||| || || Sbjct 3581 CTGAACCAGAGATGCTGAA-GAACGGCACGCTGGCCTCGCCAGCCGTGGCCTTCGCCAGC 3639 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 | || || |||||||| || | ||| |||| || ||||| ||||||||| || ||| Sbjct 3640 AACGTTTTGCCCGTACCGGGCGGGCCAACGAGCAGCGCGCCCTTGGGGATCTTCGCTCCA 3699 Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTG 11967 | | |||||| | || ||||||||||| | |||| | ||||| ||| Sbjct 3700 AGCTCCGTGAAGCGCTTTTGGTTGCGAAGGAAGTCCACGAACTCCATGATTTCCTTCTTT 3759 Query 11968 GC 11969 || Sbjct 3760 GC 3761 >seq3008 Length=2101 Score = 105 bits (116), Expect = 8e-18 Identities = 349/529 (66%), Gaps = 19/529 (4%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || || ||||| | ||| |||||||| || ||||| || | || ||||| | ||||| Sbjct 1255 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATC 1196 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTTG-ACCAACTTGTTTCAGAAGACG 119326 |||| || || || || ||| |||| ||| || ||| | | | ||| || || Sbjct 1195 CAGTCGAACGGGTTCTTCACGTTGTAGATCT-TGGATGCACCCAGTGAGTACAGCAGGCG 1137 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 |||| || ||||||| || | | |||| | || ||||| || || || | || Sbjct 1136 GTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTC-CA 1078 Query 119387 CGGG-AGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445 |||| || | ||| | ||| | | ||| ||| ||||||| || |||||| | || Sbjct 1077 CGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 1018 Query 119446 GAATA-GTTTCTGTCGATGGTTTGTTTCTCAA----GAGTTTAAACAACTCTACGGCAAA 119500 | | | ||| || | ||||| ||| |||| | | | | ||| || Sbjct 1017 GCACGCGGCTCTC-CGGCAGCTTGTTCACCAACTTCGAGT--ACATGAGGC-ACGCGAAG 962 Query 119501 TTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCAT 119560 | | || | ||||| | ||||| ||||||||| || ||||| || |||||||| Sbjct 961 TCCGTGTGCATGCCCT-CGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCAT 903 Query 119561 GAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTC 119620 ||| || | ||||| ||||| ||||||| || || || || ||||| |||||||| Sbjct 902 GAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTC 843 Query 119621 CACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGAC----TTGTCGAACCACT 119676 ||| |||||| || | |||||||| | ||| ||| || ||| |||||| Sbjct 842 CACGGCGGCGAACGCCAGCAGACGCTCCG-GGTAGGACGAAACACGAGGGTCACACCACT 784 Query 119677 TGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 |||| |||||| |||||| ||| | ||| |||| || | |||||| Sbjct 783 TGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588942627147400