Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278235.1_202015-09-02] 4,533 sequences; 41,964,659 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq498 306 5e-78 seq4406 248 1e-60 seq1514 167 3e-36 seq89 145 1e-29 seq289 127 3e-24 seq280 123 3e-23 seq954 122 1e-22 seq41 116 5e-21 seq437 102 1e-16 seq176 87.8 2e-12 >seq498 Length=17751 Score = 306 bits (338), Expect = 5e-78 Identities = 1029/1584 (65%), Gaps = 26/1584 (2%) Strand=Plus/Minus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAGAG 195364 || ||||| | || || || ||||| || || || || ||||| || || || || || Sbjct 5694 GGCATCGACCTGGGCACGACCTACTCGTGCGTGGGCGTGTGGCAGAACGACCGCGTGGAA 5635 Query 195365 ATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAAT 195424 || || |||| ||||| || ||||| || || || || ||||| ||||| || || | Sbjct 5634 ATCATTGCGAACGACCAGGGCAACCGCACGACACCGTCCTACGTGGCCTTCACGGACACG 5575 Query 195425 GAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTC 195484 || || || | || || || || || || ||| || |||||| | ||| || || Sbjct 5574 GAGCGCCTTATCGGCGACGCGGCCAAGAACCAGGTGGCCATGAACGCGCACAACACGGTG 5515 Query 195485 TTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATA 195544 ||||| | |||||| | || || |||||||| | || |||| || || || Sbjct 5514 TTTGATGTCAAGCGTTTGATCGGGCGCAAGTTCACCGACCCTGAAGTGCAGTCGGACATC 5455 Query 195545 AAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGAA 195604 | | ||||| | | | |||| | || ||| || ||||||| | | || || | Sbjct 5454 AGGCACTGGCCGTTTAAAGTGGCTCGAGGTCCGGAGAATAAGCCGGA-AGTGGTGGTGCA 5396 Query 195605 TTTCAC-GGTGAGAAGAAACAATTTGCT-CCCGAAGAAATTTCGTCTATGGTGTTGATTA 195662 |||| |||||| || | ||| | ||||| || || ||||| |||||| || | | Sbjct 5395 GTTCAAAGGTGAGCAGGTG-ACTTTCCAGCCCGAGGAGATCTCGTCCATGGTGCTGGTCA 5337 Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722 ||||| |||| ||||| ||| ||| ||||| ||||| | ||||| ||||| | Sbjct 5336 AGATGCGCGAGATCGCGGAGGCTTACATTGGTAAGCAGGTGAAGAACGCAGTGGTGACGG 5277 Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782 | || || ||||||| || || || ||||||||||| || || || | || ||||| | Sbjct 5276 TGCCGGCCTACTTCAACGACTCGCAGCGACAGGCGACCAAAGATGCCGGTGTCATTGCTG 5217 Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842 || | ||| || | || ||||| || || ||||| || || ||||| || ||||||| Sbjct 5216 GTTTGAACGTGCTACGTATCATCAACGAGCCGACAGCCGCCGCTATTGCCTACGGTCTGG 5157 Query 195843 ACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTG 195902 ||||| |||| | ||| | || || ||||||| || || ||||| || ||||||| Sbjct 5156 ACAAG---AAGGGTGGAGAGCACAACGTGCTGATCTTCGACCTTGGTGGAGGAACGTTTG 5100 Query 195903 ATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATA 195962 | ||||| ||||| | |||||||| || || ||||| || ||||| || || || || | Sbjct 5099 ACGTCTCGCTTCTTACTATTGAAGACGGCATCTTCGAGGTGAAGGCGACGGCAGGCGACA 5040 Query 195963 CTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTC-CGTCATTTGTCTGATGAGTTC 196021 | || || || || ||||| ||||| || || || || ||||| | || ||| Sbjct 5039 CGCACCTGGGCGGCGAAGACTTCGACAACCGCCTCGTCGAGTTCTTTGT-GCAAGAATTC 4981 Query 196022 CGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACT 196081 || ||| || || ||||| | | || | | || || || || || | || Sbjct 4980 AAGCGCAAGCATCGCAAGGATATGACGGTGAACTCGCGCGCGCTGCGGCGTCTGCGTACG 4921 Query 196082 GCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGAT 196141 || || || |||||||| || || || || | || ||| | | |||||||| Sbjct 4920 GCGTGCGAGCGTGCCAAGCGTACACTGTCGATGTCTGCGCAAGCGTACATCGAGATTGAC 4861 Query 196142 TCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTA 196201 ||| || | || || | || ||| | | || ||||| || || || || || || | Sbjct 4860 TCGCTGCTGGATGGTGTCGATTTCAACTCTACCATTACGCGCGCGCGGTTCGAGGATCTT 4801 Query 196202 AACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAG 196261 ||| || ||| | ||| ||||| || || | || || || || ||| | ||| Sbjct 4800 TGTGGTGAATTCTTTCGCAAGACAATGGACCCAGTGGCGCAGGTTCTACGAGACTCGAAG 4741 Query 196262 ATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAG 196321 || ||| |||| | || | || || ||||| || || || ||||| |||||| Sbjct 4740 CTGTCGAAGAGCCAGGTGAACGAGGTGGTGCTAGTGGGCGGCTCGACGCGTATCCCGAAG 4681 Query 196322 ATTCAACAGATGCT-TTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCC 196380 | || ||| || | || | ||| ||||| ||| | | ||| | |||||||| Sbjct 4680 GTGCAGCAGTTGTTGATCGA-CTTTTTCAACGGTAAGAAGCTCTTCAAGTCCATCAACCC 4622 Query 196381 GGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAA 196440 ||| ||||| || || || ||||| | || ||||| || || || ||| |||| Sbjct 4621 GGACGAAGCCGTAGCGTACGGTGCTACAGTGCAGGCGGCCATCCTGAGCGGTCATGAC-- 4564 Query 196441 TAATAACGTCCAA-------GATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTC 196493 | | ||||||| || || |||| | || || || || | || || || Sbjct 4563 TCGT--CGTCCAAGCTGCAGGACCTGTTGCTGTTGGACGTGGCGCCGCTGTCTCTAGGCT 4506 Query 196494 TTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTA 196553 | || || || || || || ||||| || | || | ||||| || |||| | | Sbjct 4505 TGGAGACGGCTGGCGGAGTCATGACCAAGCTGATCCCGCGCAACACCACGGTTCCAGCCA 4446 Query 196554 AGAAGGAACAAGTC-TTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTA 196612 |||||| | |||| || || ||||| | || || || | ||||| || ||||| Sbjct 4445 AGAAGGCGC-AGTCGTTCTCGACGTACGCGGACAACCAGTCCGGTGTCTTGATCCAAGTG 4387 Query 196613 TATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGG-AACTTTCGATTTGAC 196671 | || || || || || | || || ||| | || || || ||| || ||| Sbjct 4386 TTCGAGGGTGAGCGTTCGATGACCTGTGACAATCATATTCTGGGCAAGTTTAACTTGGAC 4327 Query 196672 GGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGC 196731 || || || | || | ||||| || || ||| | || ||||| | || | Sbjct 4326 -GGCATCCCGCCCATGCCTCGCGGTGTCCCGCAAATTGACGTGACGTTCGACGTGGATGT 4268 Query 196732 AAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGT 196791 || || ||| | ||||| | || | ||| ||| | | ||||| | ||||| Sbjct 4267 CAACGGCATTTTGAACGTGTCGGCCGTGGAGAAGTCGACGGGCAAGGAGAACAAGATCAC 4208 Query 196792 GATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGC 196851 || || || |||||||| ||| | ||| || || || || || |||||| | || || Sbjct 4207 CATCACGAACGACAAGGGCCGGTTATCTCAGTCCGAGATCGACCGCATGGTTGATGACGC 4148 Query 196852 GGAAAAGTACAGGGAAGAAGACGA 196875 || ||||||| ||| |||| || Sbjct 4147 TGAGAAGTACAAGGACCAAGATGA 4124 >seq4406 Length=1963 Score = 248 bits (274), Expect = 1e-60 Identities = 858/1331 (64%), Gaps = 11/1331 (1%) Strand=Plus/Minus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAGAG 195364 || ||||| | || || || ||||| || || || || ||||| || || || || ||| Sbjct 1426 GGCATCGACCTCGGCACGACCTACTCGTGNGTGGGCGTGTGGCAGAACGACCGCGTGGAG 1367 Query 195365 ATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAAT 195424 || ||| | || ||||| || ||||| || || || || ||||| ||||| || || | Sbjct 1366 ATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCCTACGTGGCCTTCACGGACACG 1307 Query 195425 GAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTC 195484 || || || | || |||||||| || || ||| || |||||| | ||| || || Sbjct 1306 GAGCGCCTGATCGGTGATGCCGCCAAGAACCAGGTGGCCATGAACGCGCACAACACGGTG 1247 Query 195485 TTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATA 195544 || ||||| ||||| ||||| || |||||||| ||||| || || || | ||| || Sbjct 1246 TTCGACGCCAAGCGCCTTATCGGCCGCAAGTTCTCGGACCCGATCGTGCAGGCCGACATC 1187 Query 195545 AAGGACTGGTCTTATGAAGTTGTTCCCGGT-GTGGCTGATAAGCCTATGATTAATGTTGA 195603 ||| ||||| | | | ||| ||| |||| | | || ||||| ||| | || | Sbjct 1186 AAGCACTGGCCGT-TCAAGCTGTCGCCGGGCGCCGGCGACAAGCCGCAGATCACGGTGCA 1128 Query 195604 ATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAA 195663 || | || ||| || || ||||| || || ||||| |||||| | || || Sbjct 1127 GTTCAAGGGCGAGTCCAAGACGTTCCAGCCCGAGGAGATCTCGTCCATGGTGCTCATCAA 1068 Query 195664 GATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGT 195723 |||| ||| || || | ||||| || || || || | || || | || || Sbjct 1067 GATGCGCGAGGTGGCCGAGGCCTTCATCGGCAAGGAGGTCAAGAACGCCGTCATCACGGT 1008 Query 195724 ACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGG 195783 ||| || ||||||| || || || || ||||| || |||||||| | ||| || || || Sbjct 1007 ACCGGCCTACTTCAACGACTCGCAGCGCCAGGCCACCAAGGACGCCGGTGCCATCGCCGG 948 Query 195784 TCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGA 195843 || ||| || | || ||||| || || || || || || ||||| || || ||||| Sbjct 947 GCTGAACGTGCTGCGTATCATCAACGAGCCCACGGCCGCCGCTATTGCGTACGGCCTGGA 888 Query 195844 CAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGA 195903 |||| |||| || || || || ||||||| || || || || || || || || Sbjct 887 CAAG---AAGGGCGGCGAGCGCAACGTGCTGATCTTCGACCTGGGCGGCGGCACCTTCGA 831 Query 195904 TGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATAC 195963 ||| || || || ||||| | || || ||||| || ||||| || ||||| || || Sbjct 830 TGTGTCGCTGCTGTCCATTGAGGAGGGCATCTTCGAGGTGAAGGCCACCGCTGGCGACAC 771 Query 195964 TCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTC-CGTCATTTGTCTGATGAGTTCC 196022 || || || || || || ||||| || || || || || || | |||||| Sbjct 770 GCACCTGGGCGGCGAGGACTTCGACAACCGCCTCGTCGAGTTCTTCGT-GCAGGAGTTCA 712 Query 196023 GTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTG 196082 || || | || || || | || | | || || || || || | || | Sbjct 711 AGCGCAAACACCGCAAGGACATGGCACAGAACCAACGCGCGCTGCGGCGTCTGCGTACGG 652 Query 196083 CATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATT 196142 | || || || ||||| || || || || || |||| || | |||| || || | Sbjct 651 CGTGCGAGCGCGCCAAGCGGACGCTGTCGTCGTCGGCCCAGGCCTACATTGAAATCGACT 592 Query 196143 CGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAA 196202 || ||| ||||| | |||||| | | || || || || || ||||| || || | Sbjct 591 CGCTGTACGACGGCGTGGACTTCAACTCGACCATCACGCGCGCCCGTTTCGAGGACCTGT 532 Query 196203 ACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGA 196262 | || | || | ||| ||||| || || || | || | || ||||| ||| Sbjct 531 GCGGCGACTACTTCCGAAAGACCATGGAGCCCGTGGAGAAGGTGTTGCGCGACGCCAAGC 472 Query 196263 TGGATAAG-TCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAG 196321 || ||| | |||| | || | || || ||||| || || || ||||| |||||| Sbjct 471 TGTCCAAGAGCCNAGGTGAACGAGGTGGTGCTAGTGGGCGGCTCGACGCGTATCCCGAAG 412 Query 196322 ATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCG 196381 | || || |||| ||| |||||||| || || ||||| | ||||||||| Sbjct 411 GTGCAGCAACTGCTGTCTGAGTTCTTCAACGGCAAGGAGCCCAACAAGTCCATCAACCCG 352 Query 196382 GATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGAC--- 196438 || || || || || || || || | || ||||| || || || || ||| Sbjct 351 GACGAGGCCGTAGCGTACGGCGCAACGGTACAGGCGGCCATCCTGGGCGGCAACGACTCG 292 Query 196439 AATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAA 196498 | || | || || || |||| | || || | || | || ||||| || || Sbjct 291 TCGGACAAGCTGCAGGACCTGTTGCTGTTGGACGTGACGCCGCTGTCTCTGGGCCTGGAG 232 Query 196499 ACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAG 196558 || || || ||||| ||||| | | || | | ||||| || | || || |||||| Sbjct 231 ACGGCAGGCGGTGTCATGACGACGCTGATCGCGCGTAACACGACGGTGCCTACCAAGAAG 172 Query 196559 GAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAA 196618 | || || || ||||| | || || ||||| ||||| | || || || | || Sbjct 171 GCGCAGACGTTCTCGACGTACGCGGACAACCAACCTGGTGTGCTCATCCAGGTGTTCGAG 112 Query 196619 GGAGAACGCTC 196629 || || ||||| Sbjct 111 GGCGAGCGCTC 101 >seq1514 Length=5520 Score = 167 bits (184), Expect = 3e-36 Identities = 614/961 (64%), Gaps = 3/961 (0%) Strand=Plus/Minus Query 195920 ATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAA 195979 ||||| | || || ||||| || ||||| || ||||| || || || || |||||||| Sbjct 5518 ATTGAGGAGGGCATCTTCGAGGTGAAGGCCACCGCTGGCGACACGCACCTGGGTGGTGAG 5459 Query 195980 GATTTCGATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAA 196039 || ||||| ||||| | || || || | |||||| || ||| | || Sbjct 5458 GACTTCGACAACCGTCTGGTGGACCACTTCACTCAGGAGTTCAAGCGCAAGCACCGCAAG 5399 Query 196040 GATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAA 196099 || || | | || | | || || ||||| || | || || || || ||||| || Sbjct 5398 GACATCACGGACAACCAGCGTGCCCTCCGTCGTCTGCGTACGGCTTGCGAGCGTGCTAAG 5339 Query 196100 CGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATT 196159 || || || || || |||| || | | |||||||| || |||| || || ||| Sbjct 5338 CGTACGCTTTCGTCGTCGGCCCAGGCCTACATCGAGATTGACTCTCTGTTCGATGGCATT 5279 Query 196160 GACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGG 196219 ||||| | | || || || || || ||||| || || | | ||| | || | Sbjct 5278 GACTTTAACTCGACCATCACGCGCGCCCGTTTCGAGGACATGTGCGGTGACTACTTCCGT 5219 Query 196220 AAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTT 196279 ||| ||||| || || || | || | || ||||| ||| || ||| |||| Sbjct 5218 AAGACCATGGAGCCCGTGGAGAAGGTGTTGCGCGACGCCAAGCTGTCCAAGAGCCAGGTG 5159 Query 196280 GATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCT 196339 | || |||||||||| || || || || ||||| |||||| | || ||| | || || Sbjct 5158 CACGAGGTTGTCCTTGTCGGTGGCTCGACGCGTATCCCGAAGGTGCAGCAGCTTCTGTCC 5099 Query 196340 AGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTAT 196399 ||||||||| || || ||||| | ||||||||||| || || || || || Sbjct 5098 GACTTCTTCAACGGCAAGGAGCCCAACAAGTCCATCAACCCGGACGAGGCTGTGGCCTAC 5039 Query 196400 GGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAAT---AATAACGTCCAAGAT 196456 ||||| |||| |||||||| || || || ||| | | || | || || Sbjct 5038 GGTGCCACCGTCCAGGCTGCCATCCTGAGTGGCAACGACTCTTCGGAGAAGCTGCAGGAC 4979 Query 196457 CTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATG 196516 || |||| || ||||| | || | || |||||||| || || || || ||||| ||| Sbjct 4978 CTGTTGCTGCTCGATGTGACTCCTCTGTCTCTGGGTCTGGAGACGGCAGGCGGTGTCATG 4919 Query 196517 ACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACG 196576 || | | || | | ||||| || | || || |||||| || || || ||| Sbjct 4918 ACGACGCTGATCGCGCGTAACACGACGGTGCCTACCAAGAAGTCGCAGACGTTCTCGACG 4859 Query 196577 TATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCA 196636 || | || || ||||| ||||| | ||||| || | || || || ||||| | Sbjct 4858 TACGCGGACAACCAACCTGGTGTGCTCATTCAGGTGTTCGAGGGCGAGCGCTCGATGACC 4799 Query 196637 AAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGT 196696 || ||| | || || || | ||| | || || || || | || | ||| Sbjct 4798 CGTGACAACAACCTGCTGGGCAAGTTCAACCTGGACGGCATCCCGCCCATGCCTCGTGGT 4739 Query 196697 GTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCT 196756 ||||| |||||| |||| ||||| || ||||| || || || || ||||| | || Sbjct 4738 GTTCCCCAGATTGATGTGACGTTCGACATCGACGCGAACGGGATCCTGAACGTGTCGGCC 4679 Query 196757 GAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTT 196816 | ||| ||| | | ||||| | ||||| || || || |||||||| || || Sbjct 4678 GTGGAGAAGTCGACGGGCAAGGAGAACAAGATCACCATCACGAACGACAAGGGCCGACTG 4619 Query 196817 TCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAG 196876 || || || || || || ||||| || || || ||||||| | || |||||| Sbjct 4618 TCGCAGTCCGATATCGACCGCATGGTGGCGGAGGCCGAGAAGTACAAGTCGGAGGACGAG 4559 Query 196877 G 196877 | Sbjct 4558 G 4558 >seq89 Length=48311 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || | || || || || |||||| | || || ||| |||| Sbjct 15888 ATGCAGATCTTTGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCGTCG 15829 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| | ||||| ||| | || || ||||| || ||||||||||| || || || ||| Sbjct 15828 GACTCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAAGGCATCCCGCCTGACCAG 15769 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| ||||| || ||||||||||| || || || || || |||||| Sbjct 15768 CAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACAAC 15709 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || ||||||||||| || ||||| || || | || || || ||| Sbjct 15708 ATCCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGTCTGCGTGGCGGT 15661 Score = 140 bits (154), Expect = 4e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| || | || || || || |||||| | || || ||| |||| Sbjct 16116 ATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCGTCG 16057 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| | ||||| ||| | || || ||||| || ||||||||||| || || || ||| Sbjct 16056 GACTCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAAGGCATCCCGCCTGACCAG 15997 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| ||||| || ||||||||||| || || || || || |||||| Sbjct 15996 CAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACAAC 15937 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || ||||||||||| || ||||| || || Sbjct 15936 ATCCAGAAGGAGTCTACGCTGCACCTGGTGCT 15905 >seq289 Length=41845 Score = 127 bits (140), Expect = 3e-24 Identities = 389/586 (66%), Gaps = 19/586 (3%) Strand=Plus/Plus Query 77933 GGAAAGCTCATGGAGACACCTCAATACTTATTCATGCGTGTTTCTATTGGTATTCATGGA 77992 |||||| || ||||| || || | | ||||||| || | | |||||||| Sbjct 21982 GGAAAGGTCGTGGAGCGCCCCCAGCAGATGATCATGCGCGTGGCGCTGGGTATTCACAAG 22041 Query 77993 AATGATATTCCAGCGGTACTTGAAACGTATGATAAAATGTC-CAATGGTATGTTTATTCA 78051 | || || | |||| ||| | |||||||| ||||| || || | |||| || Sbjct 22042 CAAGACATCCAGGCGGCACTGCACACGTATGAGCTCATGTCACAGATGT-TCTTTACGCA 22100 Query 78052 CGCAACACCTACTTTGTTTAATGCAGGTACTCCCCGTCCACAGATGTCATCTTGTTTCCT 78111 ||| || || || | ||||| || || || || ||||| ||| |||| || |||||||| Sbjct 22101 CGCGACGCCCACGCTCTTTAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCGTGTTTCCT 22160 Query 78112 ACTTGCAAATAAGGAGGACTCTATTAATGGTATATACGGGACTCTCACAGAGTGTGCTCA 78171 || || | |||| ||||| ||| | || || |||| || |||| |||| || Sbjct 22161 GCTGGCCATGCAGGACGACTCGATTGAGGGCATTTACGACACGCTCAAGCAGTGCGCGTG 22220 Query 78172 GATTTCTAAGTGGGCTGGTGGTATAGGTCTTCA-TATTCACGATGTTCGTGCAAACAAGT 78230 || || |||||||| || ||||| || | ||| ||| ||| | | || || | || Sbjct 22221 CATCTCCAAGTGGGCCGGAGGTATTGG-CATCAGTATGCACAACATCCGCGCCACGAACA 22279 Query 78231 CCAGGATTAGAGGAACTAATGG-TCAGTCTGATGGAATTATTCCTATGCTTAGGGTATTC 78289 | || | || || || || ||| || | || || || || ||||| ||||| ||| Sbjct 22280 GCTACATCCGCGGCACGAACGGATCA-TCCAACGGGATCATCCCCATGCTGAGGGTCTTC 22338 Query 78290 AATGCTACAGCACGCTATGTCAACCAAGCGGGTCGTAGG---AAGGGGTCATTCGCTATG 78346 |||| || || |||||||| |||| | || | | | || || || ||||| || Sbjct 22339 AATGACACGGCCCGCTATGTGGACCAGGGAGGAGGCAAGCGCAAAGGCTCGTTCGCCATC 22398 Query 78347 TACCTTGAACCTTGGCACGCCGATGTAATGGATTTTTTGGAACTTCGTCTCAACCAGGGT 78406 ||||| || || ||||||||||| || | || || |||| || || ||||| || Sbjct 22399 TACCTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGAGCTGCGCAAGAACCACGGC 22458 Query 78407 GACGAG--GAAGCTCGATGCAGGGATTTATTCACTGCTATGTGGATTCCGGATCTTTTTA 78464 ||||| | | | || || | || | ||| ||| ||||| | || ||||| || | Sbjct 22459 AACGAGCTGCACCGCG-CGC-GCGACCTCTTCTACGCTCTGTGGGTCCCCGATCTGTTCA 22516 Query 78465 TGAAGAGAGTTGAGGAAG-GA--GGTAAATGGTCTCTTTTCTGTCC 78507 ||||| | || ||||| || || || ||| |||||||| || Sbjct 22517 TGAAGCG---TGTGGAAGCGAACGGCAAGTGGAGCCTTTTCTGCCC 22559 >seq280 Length=48508 Score = 123 bits (136), Expect = 3e-23 Identities = 209/299 (70%), Gaps = 13/299 (4%) Strand=Plus/Minus Query 198659 TTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGC 198718 ||||||||| |||||||||||||| ||| | ||| || || || || || || | || Sbjct 3579 TTTCATCGAAATGTTCGTTGGTGTGGGTCCCTCGCGTGTACGTGACCTGTTCAAGGAGGC 3520 Query 198719 ACGTGAAAATCAACCATGTATCATCTTCATTGATGAGATTGACGCTGTTG-----GTAAG 198773 || | || ||||| || | ||||| ||||| ||||| ||||| | | | | Sbjct 3519 TCGCGCGAACGCTCCATGCATTGTGTTCATCGATGAAATTGATGCTGTGGCCCGTGCACG 3460 Query 198774 AAGCGTGGTGGAACTACTACACCTGGTAATGATGAGCGTGAGCAGACGATTAACCAGCTT 198833 |||| || | |||| || | | || ||||| |||||||| | ||| | |||||||| Sbjct 3459 AAGCAAGG-GCAACTTCTCCGGC-GGCAATGACGAGCGTGAAAACACGCTCAACCAGCTG 3402 Query 198834 CTCACTGAGATGGATGGTTTTGAC---AATGAGACTGGTATCGTGGTGATTGCTGCTACA 198890 || |||||||||||||| || | |||| ||| | |||||| |||||| ||| Sbjct 3401 CTGGTGGAGATGGATGGTTTCAACTCGAGTGAG---GGTGTGGTGGTGCTTGCTGGTACG 3345 Query 198891 AATAGGATTGATATCCTAGATGATGCACTGCTTCGTCCCGGTCGATTCGACCGTAAGAT 198949 || | ||||| || || | || | || |||||||||||||||||||| |||| Sbjct 3344 AACCGCGCCGATATTCTTGACAAGGCCATCCTGCGTCCCGGTCGATTCGACCGGCAGAT 3286 >seq954 Length=8267 Score = 122 bits (134), Expect = 1e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| || || || || ||||| || || || ||| |||| Sbjct 3567 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 3626 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||| || || || |||| || || || || |||||||||||||| || || ||| Sbjct 3627 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAG 3686 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || || ||| | ||||||||| Sbjct 3687 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGATTACAAC 3746 Query 172042 GTTCAAAAGG 172051 | || |||| Sbjct 3747 ATCCAGAAGG 3756 >seq41 Length=72582 Score = 116 bits (128), Expect = 5e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| || | || || || || ||||| || || || ||| | || Sbjct 19628 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 19569 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| | ||||| ||| | || || || ||||| ||||| ||||| || ||||| ||| Sbjct 19568 GACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 19509 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || || || || |||||| Sbjct 19508 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 19449 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||||||||| || ||| | || || | ||||| || || Sbjct 19448 ATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTTCGCGGCGG 19402 Score = 116 bits (128), Expect = 5e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| || | || || || || ||||| || || || ||| | || Sbjct 19856 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 19797 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| | ||||| ||| | || || || ||||| ||||| ||||| || ||||| ||| Sbjct 19796 GACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 19737 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || || || || |||||| Sbjct 19736 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 19677 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||||||||| || ||| | || || | || || ||||| Sbjct 19676 ATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTGCGTGGTGG 19630 >seq437 Length=30324 Score = 102 bits (112), Expect = 1e-16 Identities = 384/594 (65%), Gaps = 20/594 (3%) Strand=Plus/Plus Query 196268 AAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAA 196327 ||||| |||| || || ||||| || ||||| || || |||||||| || ||| | || Sbjct 14735 AAGTCGGAGGTGGACGAGATTGTGCTGGTGGGCGGTTCGACCCGTATCCCCAAGGTGCAG 14794 Query 196328 CAGATGCTTTCTAG--CTTCTTCAATAATAAAGATTTAAACAAAACGA----TCAACCCG 196381 ||| || | | || || |||||| ||||| | || | ||||| Sbjct 14795 CAGCTGAT--CAAGGACTACTTCAACGGCAAAGAGC----CCTCGCGCGGTGTGAACCCC 14848 Query 196382 GATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAAT 196441 || || || ||||| || ||||| || || |||| | ||| || |||| || | Sbjct 14849 GACGAGGCTGTTGCCTACGGTGCTGCTGTGCAGGGCGGTATCCTG---GGTGGCGAGCAG 14905 Query 196442 AATAACGT--CCAAGATCTT-CTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAA 196498 | || | ||||| | | || || | ||||| | || | |||| |||| |||| Sbjct 14906 GACGACCTGACCAAGGACGTGCTTCTGATCGATGTGGTGCCTCTGTCCCAGGGTATTGAG 14965 Query 196499 ACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAG 196558 || | |||||| || ||||| || | ||| | | ||||| || ||||| |||||| Sbjct 14966 ACTGTGGGTGGCGTCATGACCAAGCTCATTAACCGCAACACTGTGATCCCGACCAAGAAG 15025 Query 196559 GAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAA 196618 || ||| || || || || || || || | ||| | ||| || || | || Sbjct 15026 TCGCAGACCTTCTCGACCTACCAGGACAACCAGCCCGCTGTGCTTATCCAGGTGTTCGAG 15085 Query 196619 GGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGAT 196677 || || || | || || | ||||| |||| ||| || || | ||||| | || || | Sbjct 15086 GGCGAGCG-TGCCATGACCAAGGACAACCGTCTTCTGGGCAAGTTCGAGCTCACTGGCCT 15144 Query 196678 TCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGG 196737 || | || || | ||||| || |||||| | || ||||| || ||||| || || Sbjct 15145 GCCGCCCGCCCCGCGTGGTGTGCCCCAGATTGAGGTGACGTTCGAGATTGACGCCAACGG 15204 Query 196738 AATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTAC 196797 || || | || | ||||||||||||| | ||||| | || | ||| ||| || Sbjct 15205 TATCCTGCAGGTGTCCGCTGAGGACAAGGGCACGGGCAAGGCCGAGACGATCACGATCAC 15264 Query 196798 CAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGC 196851 || ||||| || || || ||||||| || || || ||||| || || || Sbjct 15265 TGCCGAGAAGGGCCGTCTGTCGCAGGAGGAGATCGACCGCATGGTCCAGGAGGC 15318 >seq176 Length=35822 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/71 (90%), Gaps = 4/71 (6%) Strand=Plus/Minus Query 167232 GTGGGGTTTGAACCCACG-AGACTTGC--GTC-AGCGGGTCTTAAGTCCGCCCCCTTAGA 167287 |||||||||||||||||| ||||| | ||| ||||| ||||||||||||||||||||| Sbjct 269 GTGGGGTTTGAACCCACGCAGACTGGAATGTCTAGCGGATCTTAAGTCCGCCCCCTTAGA 210 Query 167288 CCACTCGGGCA 167298 ||||||||||| Sbjct 209 CCACTCGGGCA 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657825123871760