Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278235.1_202015-09-02] 4,533 sequences; 41,964,659 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq289 152 5e-32 seq89 149 6e-31 seq41 149 6e-31 >seq289 Length=41845 Score = 152 bits (168), Expect = 5e-32 Identities = 353/527 (67%), Gaps = 9/527 (2%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || || ||| | ||||||||||| |||| |||||| ||||||| | || || || Sbjct 22003 CAGCAGATGATCATGCGCGTGGCGCTGGGTATTCACAAGCAAGACATCCAGGCGGCACTG 22062 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 | ||||| | | ||||| || ||||||||||| ||||||| | ||| | Sbjct 22063 CACACGTATGAGCTCATGTCACAGATGTTCTTTACGCACGCGACGCCCACGCTCTTTAAC 22122 Query 7684 GCGGGCACAAACGCG-CCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 || ||||| |||| || || |||| |||||||| |||| |||||| || ||| Sbjct 22123 GCCGGCAC-GCCGCGTCCGCAGCTGTCGTCGTGTTTCCTGCTGGCCATGCAGGACGACTC 22181 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG 7802 || || ||||||||| ||||||| | ||||| || ||||| | | ||| || Sbjct 22182 GATTGAGGGCATTTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCCGGAGG 22241 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGG 7862 || || | | | || || | ||||||| ||| |||| ||| ||||| Sbjct 22242 TATTGGCATCAGTATGCACAACATCCGCGCCACGAACAGCTACATCCGCGGCACGAACGG 22301 Query 7863 AAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGA 7922 | | ||| ||| | |||||| || | || |||||| || ||| || |||| || Sbjct 22302 ATCATCCAACGGGATCATCCCCATGCTGAGGGTCTTCAATGACACGGCCCGCTATGTGGA 22361 Query 7923 CCAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979 |||||| ||| |||||||||||| | |||||||| |||||||||||||||| || Sbjct 22362 CCAGGGAGGAGGCAAGCGCAAAGGCTCGTTCGCCATCTACCTGGAGCCGTGGCACGCCGA 22421 Query 7980 CATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCA--AAGCGCGC 8037 | | | || | || | ||||| ||| || ||| | ||| |||||| Sbjct 22422 CGTGTTCGAGTTCCTGGAGCTGCGCAAGAACCACGGCAACGA--GCTGCACCGCGCGCGC 22479 Query 8038 GATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGT 8084 || || |||| || ||||||| ||||||||||| |||| ||| || Sbjct 22480 GACCTCTTCTACGCTCTGTGGGTCCCCGATCTGTTCATGAAGCGTGT 22526 >seq89 Length=48311 Score = 149 bits (164), Expect = 6e-31 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| ||||| || ||||| || ||||||||||||| | ||| | Sbjct 15899 AGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 15958 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || ||||||| |||||||| || ||||| |||||||| Sbjct 15959 CCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCC 16018 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || |||||||| || || || ||| | | ||| |||| |||||||| | || Sbjct 16019 TTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTG 16078 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTT 134720 || || || || || ||||| || ||||| || ||||| ||| || Sbjct 16079 ATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTTGGTT 16123 Score = 141 bits (156), Expect = 9e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| ||||| || ||||| || ||||||||||||| | ||| | Sbjct 15671 AGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 15730 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || ||||||| |||||||| || ||||| |||||||| Sbjct 15731 CCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCC 15790 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || |||||||| || || || ||| | | ||| |||| |||||||| | || Sbjct 15791 TTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTG 15850 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| || || || || ||||| Sbjct 15851 ATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 15888 >seq41 Length=72582 Score = 149 bits (164), Expect = 6e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || |||| ||| | ||| ||||| || ||||| || |||||||||||| Sbjct 19399 TTTCCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCG 19458 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | ||| || ||| || ||||| ||||| || || |||| ||||||||| |||||| Sbjct 19459 CTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGC 19518 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || ||||| || || ||||| ||||| || || || ||| | | ||| || | ||| Sbjct 19519 GGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCC 19578 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || ||||| || || || || || || ||||| || ||||| Sbjct 19579 ACGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 19628 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| | ||| ||||| || ||||| || ||||||||||||| | ||| || Sbjct 19639 AGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGA 19698 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || |||| ||||||||| |||||||| ||||| || Sbjct 19699 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCC 19758 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| ||||| || || || ||| | | ||| || | |||||||| || || Sbjct 19759 TTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTG 19818 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTTGT 134724 ||||| || || || || || || ||||| || ||||| | |||| || Sbjct 19819 ATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGATCTTTTAGT 19867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505369762863160