Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278235.1_202015-09-02] 4,533 sequences; 41,964,659 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq41 116 3e-21 seq89 109 5e-19 >seq41 Length=72582 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| |||| ||||| || | |||||| || || || || |||||||||| Sbjct 19628 TGCCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGC 19687 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| |||| |||| || ||||| || |||||| | || |||||||| || || |||| Sbjct 19688 TCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCG 19747 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||| || | |||| | | || | | ||| | | || | Sbjct 19748 GGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCA 19807 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | |||||||||| || ||||| ||||| ||||| Sbjct 19808 CGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 19856 Score = 114 bits (126), Expect = 1e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 27012 TAATTATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTG 27071 || || || || ||||| | |||| ||||| || | |||||| || || || || ||| Sbjct 19393 TAGTTGTTTCCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTG 19452 Query 27072 TAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGA 27131 |||||||||| |||| |||| || ||||| || |||||| | || |||||||| || Sbjct 19453 TAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGG 19512 Query 27132 TCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTG 27191 || ||||| | ||||| || || ||| || | |||| | | || | | ||| | Sbjct 19513 TCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAA 19572 Query 27192 GCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || || || | |||||||||| || ||||| ||||| ||||| Sbjct 19573 GGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 19628 >seq89 Length=48311 Score = 109 bits (120), Expect = 5e-19 Identities = 169/240 (70%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 27009 TCATAATTA-TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAAT 27067 |||| |||| || || || |||| |||| |||| || | |||||| || || || || Sbjct 15649 TCATGATTAGTTACCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGAT 15708 Query 27068 ATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTG 27127 ||||||||||||| |||| ||||||| ||||| || || ||| |||| || ||||| Sbjct 15709 GTTGTAGTCGCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTG 15768 Query 27128 TTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTC 27187 || || ||||| | || || || || || || | |||| | | || | | ||| Sbjct 15769 CTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTC 15828 Query 27188 TGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | | || || || | || || | |||||||||| ||| ||||||||||| ||||| Sbjct 15829 CGACGGCTCCACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 15888 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| |||| |||| || | |||||| || || || || |||||||||| Sbjct 15888 TGCCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGC 15947 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| |||| ||||||| ||||| || || ||| |||| || ||||| || || |||| Sbjct 15948 TCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCG 16007 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || || || | |||| | | || | | ||| | | || | Sbjct 16008 GGATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCA 16067 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | || || | |||||||||| ||| ||||| ||||| ||||| Sbjct 16068 CGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 16116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424910924100696