Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278235.1_202015-09-02] 4,533 sequences; 41,964,659 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq671 125 3e-24 >seq671 Length=29535 Score = 125 bits (138), Expect = 3e-24 Identities = 327/497 (66%), Gaps = 9/497 (2%) Strand=Plus/Plus Query 66620 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 66679 |||| |||||| ||||||||| | | || | | ||||||||||| || ||||| ||| Sbjct 24183 GCCTTCATCGATGCTGAGCACGCTATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGAC 24242 Query 66680 CTCGACAACCTCGTGGTGGTTCAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTTGAC 66739 | ||| || || ||||| || | || || | || ||||| |||| ||| Sbjct 24243 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGAC 24302 Query 66740 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCCGTGGCGGCCCTGGTG 66799 ||| || ||||| | | || | |||| || | ||| |||||||| || ||| Sbjct 24303 ACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTG 24362 Query 66800 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 66859 ||||| |||||||| || ||||| || || ||| || | | ||||| ||||| | Sbjct 24363 CCGCGTGCCGAGCTTGAGGGCGAGATGGGAGACCAGCAGATTGCGCTGCAGGCGCGATTA 24422 Query 66860 ATGTCACAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAA---CACGCTGACG 66916 ||| || || ||||||||||||| || | | |||| |||| ||| | | Sbjct 24423 ATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA-- 24480 Query 66917 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACC 66976 ||| | |||||| | ||| ||||| | |||| | || ||| | |||| | Sbjct 24481 -TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCA---TTATCTTCGGATCTCCTGAGGTC 24536 Query 66977 ACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGTATGGATGTCCGTCGCATC 67036 || |||| || | || ||| | | ||||| || || || |||| | || |||| Sbjct 24537 ACGTCGGGTGGCACAGCGTTGCGCTATTACGCGTCCGTGCGCCTGGACATTCGCCGCAAG 24596 Query 67037 GCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAG 67096 | | ||||||||||| || |||||||||| || |||||||| | |||| Sbjct 24597 ACGGCTATCAAGGAAGGCGACCAGATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAG 24656 Query 67097 AACAAGCTGGCCCCGCC 67113 ||||||||||| |||| Sbjct 24657 AACAAGCTGGCGTCGCC 24673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242847382927422