Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001278235.1_202015-09-02] 4,533 sequences; 41,964,659 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq339 132 4e-26 >seq339 Length=43237 Score = 132 bits (146), Expect = 4e-26 Identities = 428/665 (64%), Gaps = 17/665 (3%) Strand=Plus/Minus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 || || || ||||||| || || || || || || || | ||| | ||| || || Sbjct 17514 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCGCCGATAACGTGAATAAATTCACCA 17455 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 |||| | ||| | || || |||| | ||| || || | |||||| || |||||| Sbjct 17454 GGTTTCAACCCTGCCACTTGTGCCACTAGACGCGTAAGCAGCGCGTAGCTTGCAATGTTA 17395 Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827 || ||||| || || |||||||| | || | |||||| | ||| ||||| | ||| ||| Sbjct 17394 AACGGCACACCAAGACCCATGTCGGCCGAGCGCTGGTACATCTGACACGACAACTCCCCG 17335 Query 29828 TCGCTCACGTAAAACTGACA---CATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAG 29884 || |||||| || || || |||| |||||||| || || ||||| || Sbjct 17334 TCCGCCACGTAGAATTGGCAGAACATG---TGGCACGGTGGCAGTGCCATCTCGTTCAGA 17278 Query 29885 TCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TG 29941 || |||||||| ||| ||| | ||| || | ||| ||||| | | | || Sbjct 17277 TCAGCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCGTCGGGTTCGTACGCAGCTTG 17218 Query 29942 AGGTCCACGGCGTTTTGCA-GCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNN 30000 | ||| | ||| |||| ||||| ||| || | |||||| | Sbjct 17217 TGAATCACCTCA----GCAAGCTGGTCCACGCCCTGTCCAGTGTAGTCCGTGTGCATGTC 17162 Query 30001 NNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTC 30060 | ||||| | ||||||||| ||||| || ||||| ||||| ||| | Sbjct 17161 CGTGTACCTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACAGGTCCGAGGTCACCCAC 17102 Query 30061 TTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGAT 30120 ||| | || || || | |||||||| | |||| ||| || || |||||||||| Sbjct 17101 TTCGCGCGACTGCAATCCTCGACTGTCCAAATACTCTCGGGACCCATTCCCGTCCCAGAT 17042 Query 30121 CTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAG 30180 | | |||||| ||| | | | | ||| || || | |||||||||||| Sbjct 17041 GTGAATGTCCTTCTGTTGCAGCGTGTGCGCGCTCGTGTCGCCGCTAATGAACCACAGCAG 16982 Query 30181 CTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAA-ACTGTCCC 30238 ||||||| | ||| | ||| || || | |||||||||||| || ||||| || || | Sbjct 16981 CTCCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAACACGTTCTC 16922 Query 30239 T-TGAGGCCGTACCTCGCCTGAGACCCAAACATGGACAAGACTCCCGTGCCTGTCCTGTC 30297 | | || | | ||| | ||| | ||||||| ||||| || ||||| || | ||| Sbjct 16921 TCTCAGACTGAACCGCATCTGTGCTCCAAACACCGACAACGTGCCAGTGCCCGTGCGGTC 16862 Query 30298 TCCCC 30302 ||||| Sbjct 16861 TCCCC 16857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406140761133238