Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933315.1_202017-01-04] 4,706 sequences; 39,039,515 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq162 131 1e-25 >seq162 Length=44331 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | ||||| | || |||||| |||| Sbjct 11672 ATGCAGATCTTTGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCGTCG 11613 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | ||||| ||||||| ||||| ||||| ||||| || || |||||||| Sbjct 11612 GACTCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAAGGCATCCCGCCTGACCAG 11553 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| || ||||| || | ||||| | ||||| || |||| ||||| Sbjct 11552 CAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACAAC 11493 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| ||||| || | ||||| Sbjct 11492 ATCCAGAAGGAATCTACGCTGCACCTGGTGCT 11461 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070 || ||||||||||| || || | ||||| | || |||||| |||| ||| | ||||| Sbjct 11888 GTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCGTCGGACTCGATCGAC 11829 Query 25071 TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATT 25130 ||||||| ||||| ||||| ||||| || || |||||||| ||||| | ||| Sbjct 11828 AACGTGAAGCAGAAAATTCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGCCTGATT 11769 Query 25131 TTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAA 25190 || || ||||| || | ||||| | ||||| || |||| ||||| || || || || Sbjct 11768 TTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAG 11709 Query 25191 TCCACGCTACATTTAGTGCT 25210 || ||||| || | ||||| Sbjct 11708 TCTACGCTGCACCTGGTGCT 11689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433303146743390