Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933315.1_202017-01-04] 4,706 sequences; 39,039,515 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq40 102 6e-17 seq162 93.3 3e-14 seq120 87.8 1e-12 >seq40 Length=75234 Score = 102 bits (112), Expect = 6e-17 Identities = 93/115 (81%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| ||||||||||| || |||||||||||||||||||||||||| || | Sbjct 39940 ACCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGA 39881 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || || |||| |||| ||||||||||| || ||||| |||||||| || Sbjct 39880 AAGAGTGCGGC-CGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 39827 >seq162 Length=44331 Score = 93.3 bits (102), Expect = 3e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| ||||||||| |||||||| || || Sbjct 11674 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTC-GCT 11732 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| || | |||||||| || || |||||||||||||| || ||| Sbjct 11733 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 11792 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || || |||||| |||||| ||||| Sbjct 11793 GATGCCTTCCTTGTCCTGAATTTTCTGCTT 11822 Score = 89.7 bits (98), Expect = 4e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| ||||||||||| || ||||| |||||||| |||||||| || || Sbjct 11445 ACCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTC-GC 11503 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | || || |||| || | |||||||| || || |||||||||||||| || || Sbjct 11504 TCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCG 11563 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | | || || |||||| |||||| ||||| Sbjct 11564 GGATGCCTTCCTTGTCCTGAATTTTCTGCTT 11594 >seq120 Length=50941 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||||||||| || ||||| ||||||||| |||||||| || || Sbjct 31065 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTC-GCT 31007 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| ||||||||||| || ||||| |||||||| || ||| Sbjct 31006 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGG 30947 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| ||||| ||||| ||||| Sbjct 30946 GATGCCCTCCTTGTCTTGGATTTTCTGCTT 30917 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || |||||||||| || ||||| ||||||||| |||||||| || || | || || Sbjct 31284 AGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTC-GCTCAGCGTGCG 31226 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| |||| ||||||||||| || ||||| |||||||| || ||| | || ||| Sbjct 31225 ACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTC 31166 Query 34029 TTTGTCCATAATTTTTTGCTT 34049 ||||| ||||| ||||| Sbjct 31165 CTTGTCTTGGATTTTCTGCTT 31145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397039626734212