Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933315.1_202017-01-04] 4,706 sequences; 39,039,515 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq120 125 8e-24 seq1131 116 4e-21 seq162 109 6e-19 seq40 89.7 6e-13 >seq120 Length=50941 Score = 125 bits (138), Expect = 8e-24 Identities = 162/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||||| |||| || |||||| || || ||||| || ||| || || | Sbjct 31054 ACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 30995 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || ||||| || || ||||||||||||| || | || |||||| Sbjct 30994 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTT 30935 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| |||||| || || | ||| | | | | ||| | ||||| || | ||||| Sbjct 30934 GTCTTGGATTTTCTGCTTCA-CGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGA 30876 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 |||| |||||||| | |||||| || ||||| ||||| ||| Sbjct 30875 TGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGTTC 30835 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||||| |||| || |||||| || || ||||| || ||| || || | Sbjct 31282 ACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 31223 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || ||||| || || ||||||||||||| || | || |||||| Sbjct 31222 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTT 31163 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| |||||| || || | ||| | | | | ||| | ||||| || | ||||| Sbjct 31162 GTCTTGGATTTTCTGCTTCA-CGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGA 31104 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| |||||||| | |||||| || ||||| ||||| Sbjct 31103 TGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 31067 >seq1131 Length=8162 Score = 116 bits (128), Expect = 4e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 4388 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 4447 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | || ||||||||||| | || | || ||||||||| |||||| || |||| | | | Sbjct 4448 TCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 4506 Query 42139 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 || | ||||| || || || || | ||||||||| |||||||| || ||||| ||| Sbjct 4507 TCAATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 4566 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 4567 AAGATCTGCAT 4577 >seq162 Length=44331 Score = 109 bits (120), Expect = 6e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| |||| || ||||| || || ||||| || ||| || || | Sbjct 11457 ACGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 11516 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| || || ||||||||||| | || | || ||||| Sbjct 11517 GTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTT 11576 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||||| || || | ||| | | | || ||| || ||||| || | |||| Sbjct 11577 GTCCTGAATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGA 11635 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||||||| | ||||| |||||||| ||||| Sbjct 11636 TCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 11672 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| |||| || |||||| || || ||||| || ||| || || | Sbjct 11685 ACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 11744 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| || || ||||||||||| | || | || ||||| Sbjct 11745 GTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTT 11804 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||||| || || | ||| | | | || ||| || ||||| || | |||| Sbjct 11805 GTCCTGAATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGA 11863 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTAC 42196 | || |||||||| | ||||| || Sbjct 11864 TCGTCTTGCCCGTCAAAGTCTTCAC 11888 >seq40 Length=75234 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| |||| ||||||||||| ||||| ||||| || | ||||| || | Sbjct 39928 ACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCC 39869 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 ||| || |||||||| || ||||| || || ||||||||||| Sbjct 39868 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 39827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543180845507040