Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933315.1_202017-01-04] 4,706 sequences; 39,039,515 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq182 187 2e-42 seq3491 118 1e-21 seq120 111 2e-19 seq1131 100 3e-16 seq162 96.9 3e-15 >seq182 Length=41727 Score = 187 bits (206), Expect = 2e-42 Identities = 624/961 (65%), Gaps = 19/961 (2%) Strand=Plus/Plus Query 153596 GGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATCT 153654 ||| | ||||||||| || || || ||| ||| |||| || || |||||| || |||| Sbjct 20054 GGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACG-TGTACTCCATAATCT 20112 Query 153655 CGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGC 153714 || ||| | |||||| | || ||| | || ||||| || ||||| ||| Sbjct 20113 CGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGG 20172 Query 153715 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATA---A 153771 |||||| ||| | |||||| |||| |||| ||||| | |||| || | ||| | Sbjct 20173 CCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGA 20232 Query 153772 ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCT 153831 ||| ||| | ||| || | | || || ||| ||||| ||||||| || Sbjct 20233 ACCA---CAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCT 20289 Query 153832 CGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGAC 153891 ||||||| ||| ||||||||||| |||| ||| ||| ||||| || || || | Sbjct 20290 CGTACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGC 20349 Query 153892 ACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGA 153951 | | || |||| | ||| || | || || |||||||||||| || ||||| | Sbjct 20350 AGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACA 20409 Query 153952 GCGCGTACATGAGGT--CGCGCGCCTTGCA-ATCCTCCGCGCCCATGTTGCGTTTCAGAT 154008 | ||||| | ||||| ||||||| |||| || | || | ||||| ||| | Sbjct 20410 GAGCGTAGAAGAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCG---CAGCT 20466 Query 154009 TGA-GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTA 154067 | | || | | | | |||||||||||| || || | ||||| ||| | | ||||| Sbjct 20467 CCAGGAACTCGA-ACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTG 20525 Query 154068 CGCTT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGT 154124 ||||| ||| ||||| || || | ||| || | | |||||||| | || |||||| Sbjct 20526 CGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGG 20585 Query 154125 TCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGA 154184 | ||| | | | ||||| || ||| | |||| |||||| | | Sbjct 20586 ATGATCCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTG 20645 Query 154185 TGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTC 154244 |||| ||| |||||| || ||| | |||| || ||| ||||| | ||||| Sbjct 20646 TGCATACTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTG 20705 Query 154245 CTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGC 154304 ||| ||||| || || ||||| | | | | |||| ||||||||| ||| ||| Sbjct 20706 TCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGC 20765 Query 154305 GGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTC 154364 ||| |||| || || |||||| ||||| ||||||||||||| | | || | Sbjct 20766 GGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGTGAC 20825 Query 154365 ATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACG 154424 || | ||||| | | || | | ||| || | |||||| || ||||| ||| Sbjct 20826 ATGAGCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCCACG 20885 Query 154425 CGCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCA 154484 ||||||| ||| ||||| || || || |||| | || | ||||| || || Sbjct 20886 CGCATGATCATCTGCTGGGGGCGCTCCACGACCTTTCCGTTCACGCGGAAGAGGTAGCCC 20945 Query 154485 TTTTCGAGGGTTTTGTAACCGAAATACTTGTATTCAAAATCTAGCTCATGAGCGATGGCC 154544 ||||| || ||| | ||||| || | ||| ||||| || | || || ||||||| Sbjct 20946 CGCTCGAGCGTCTTGAAGCCGAAGTAGTCGTACTCAAAGTCCCGGTCGTGGATGATGGCC 21005 Query 154545 G 154545 | Sbjct 21006 G 21006 >seq3491 Length=1496 Score = 118 bits (130), Expect = 1e-21 Identities = 297/447 (66%), Gaps = 11/447 (2%) Strand=Plus/Plus Query 52395 GAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCC 52454 ||||| || |||| |||||| || |||||| | || || || || ||| | || Sbjct 816 GAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCC 875 Query 52455 ATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATA 52514 ||||| | | || | | ||| | ||||| || |||| ||| |||||| | || Sbjct 876 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATC 935 Query 52515 TCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACC 52574 || ||||| || ||||||||||||| ||||||||| ||| || | |||| | Sbjct 936 AGCCGGGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTCGAAGTTGGTGAAC 995 Query 52575 GAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAG---GAGGCGGTGGCTATCGAA 52631 || || |||| | | || | | || | || || |||| || || Sbjct 996 ---AAGCTGC---CGGAGAGCCGCGTGCACGCGATCGTGCGTGACGCTGTGGTGATTGAG 1049 Query 52632 AAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATG 52691 | ||||| | | | | |||| || || |||||| | ||||||||| | | |||| Sbjct 1050 CACGAGTTCGTGAGCGACTCGCTCCCCGTGGAGCTGATCGGCATGAACTCTGCGCTCATG 1109 Query 52692 TGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG-GCAGCCAAAGTA 52750 ||| ||||||||||||| ||||| || || ||| || || || ||| |||| | Sbjct 1110 TGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCACTGGGTGCATCCAAGAT- 1168 Query 52751 CTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAA 52810 || ||||| || ||||| || | ||| | | || ||||| ||||||||||||| Sbjct 1169 CTACAACGTGAAGAACCCGTTCGACTGGATGGATATGATCTCGCTGCAGGGCAAGACCAA 1228 Query 52811 CTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| ||||||||||| || |||||||| Sbjct 1229 CTTCTTCGAGAAGCGCGTGGGCGAGTA 1255 >seq120 Length=50941 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || || || | | |||||||| || |||||||||||||| Sbjct 31066 GCCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 31007 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||| || || || |||| |||| |||||||| ||||| || || Sbjct 31006 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGG 30947 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| |||||| || || | | || | || ||| | | |||||| Sbjct 30946 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCAC 30887 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | || || || |||| || || || || ||||||||| Sbjct 30886 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 30838 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||||| || || || | | |||||||| || ||||||||||||||| Sbjct 31293 CCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 31234 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || |||| |||| |||||||| ||||| || || Sbjct 31233 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 31174 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| |||||| || || | | || | || ||| | | |||||| Sbjct 31173 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACG 31114 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | || || || |||| || || || || ||||||||| Sbjct 31113 TCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 31066 >seq1131 Length=8162 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| | || || ||||||||| || || |||| ||| Sbjct 4388 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 4447 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | || ||||| ||||| || || || ||||| ||||| |||||| || || | |||| Sbjct 4448 TCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTG- 4506 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | | |||||| || ||| || || | ||| | || || || ||||| || || ||| Sbjct 4507 TCAATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 4566 Query 138604 AAAATCTGCATG 138615 || ||||||||| Sbjct 4567 AAGATCTGCATG 4578 >seq162 Length=44331 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| ||||| || | || | | || ||||| || ||||||||||||||| Sbjct 11446 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCTC 11505 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || || || || || | | || || ||||| ||||| || || Sbjct 11506 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 11565 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||||| || || | | || | | ||| | || |||||| Sbjct 11566 ATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 11625 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||| || || |||| ||| || ||||| ||||||||| Sbjct 11626 TCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 11673 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| ||||| || | || | | |||||||| || |||||||||||||| Sbjct 11673 GCCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 11732 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||| || || || || || | | || || ||||| ||||| || || Sbjct 11733 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 11792 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||||| || || | | || | | ||| | || |||||| Sbjct 11793 GATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 11852 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | || | ||| || || |||| ||| || || Sbjct 11853 GTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCAC 11888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496233207364320