Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933315.1_202017-01-04] 4,706 sequences; 39,039,515 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq120 111 1e-19 seq412 102 6e-17 seq162 98.7 8e-16 seq40 86.0 5e-12 >seq120 Length=50941 Score = 111 bits (122), Expect = 1e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 48531 TAGTCGTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTG 48590 |||| || ||||| | || |||| |||||| || ||||| ||| || || || ||| Sbjct 31302 TAGTTGTTTCCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTG 31243 Query 48591 TAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGA 48650 || || || | ||| |||| |||| |||||| ||||| || ||||| ||||| || Sbjct 31242 TAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGG 31183 Query 48651 TCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC 48710 || | || | |||||||||||| || || || || || | | || || || Sbjct 31182 TCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAA 31123 Query 48711 GCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | |||||| |||| ||| || || || |||||||| || || || || |||||||| Sbjct 31122 GGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 31067 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || ||||| ||| || || || ||||| || || | ||| Sbjct 31056 AGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGA 30997 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || ||||| ||||| || || | || | ||||||| Sbjct 30996 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCC 30937 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || || || || | | || || || | |||||| |||| ||| Sbjct 30936 TTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTG 30877 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || |||||||| || || || || |||||||| Sbjct 30876 ATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 30839 >seq412 Length=24993 Score = 102 bits (112), Expect = 6e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 9124 AAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCG 9183 |||||| | | | ||| ||||||| | ||| |||||||| || | ||| || | ||| Sbjct 7984 AAGTCTTCGGCCGCATGGTTGAACAAGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCG 8043 Query 9184 ATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATT 9243 |||||||| || || ||||||||| | ||| | || ||||| || || ||||| | Sbjct 8044 ATCACACCGGCGCCAGTGTCGATGAATTTCTTAAGTGCGAGTCCGGAACGCGGCGCCACG 8103 Query 9244 CGACCGTAGCATCCCACCGGTAATTG-CACCCGCAAGTCGGTCATGACCAGCCCCTTGCC 9302 || |||| ||| ||| ||| || | |||| || ||| ||| |||| || |||||||| Sbjct 8104 CGCGCGTAACAT-CCAGCGGGAACGGCCACCACCAGGTCCGTCTTGACGAGGCCCTTGCC 8162 Query 9303 GTGTTTTGGAATCACGGTGTCGTAGCCG 9330 | |||||||| | ||||||| || Sbjct 8163 GCCCGCGGGAATCACAGCGTCGTAGGCG 8190 >seq162 Length=44331 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || |||| ||||| || ||||| || || || || ||||| || Sbjct 11446 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCTC 11505 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| || | |||||| || || || ||||| ||||| || || | || Sbjct 11506 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 11565 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| ||| || || || || | | || || |||| |||||| Sbjct 11566 ATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 11625 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || ||||| || ||||||||||| || ||||| |||||||| Sbjct 11626 TCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 11672 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || |||| ||||| || ||||| ||| || || || ||||| || Sbjct 11673 GCCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 11732 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| || | |||||| || || || ||||| ||||| || || | || Sbjct 11733 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 11792 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||| |||||||| ||| || || || || | | || || |||| |||||| Sbjct 11793 GATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 11852 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 |||| || ||||| || ||||||||||| || || Sbjct 11853 GTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCAC 11888 >seq40 Length=75234 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || ||||||||||| || ||||| ||||| || || ||| | || Sbjct 39930 AGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGG 39871 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 |||| |||| |||||| ||||| || ||||| ||||| || || | ||| Sbjct 39870 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGGG 39821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380915751562038