Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933315.1_202017-01-04] 4,706 sequences; 39,039,515 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq182 122 8e-23 seq120 109 5e-19 seq1131 91.5 1e-13 >seq182 Length=41727 Score = 122 bits (134), Expect = 8e-23 Identities = 320/480 (67%), Gaps = 15/480 (3%) Strand=Plus/Plus Query 139389 GCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATC 139448 ||||||||| | || ||| ||||||||||||| || | ||||| |||| | | | || Sbjct 20366 GCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGTAGAAGAGGTC 20425 Query 139449 GCGCGCCTTCTT-ATCTTCCGAACCCATGTTACGTTT-CATGTTAAGGAAATCAAAAACG 139506 |||||| | | || || || || | | | || | ||||| || || ||| Sbjct 20426 GCGCGCGCGGTGCAGCT--CGTTGCCGTGGTTCTTGCGCAGCTCCAGGAACTCGAACACG 20483 Query 139507 TCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCACCT---TGA 139563 || |||||||| || ||||| |||||||| | | |||||| || ||||| ||| || Sbjct 20484 TCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCTCCTCCCTGG 20543 Query 139564 TCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTT 139623 || || | || | | | |||||| || | || ||| || | ||| | | || | Sbjct 20544 TCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCGTTGGATGAT 20603 Query 139624 CCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATT 139683 ||||| |||| |||||| ||||| || |||| || || | | | ||||| || Sbjct 20604 CCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATACTAATGCCAATA 20663 Query 139684 CCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAAT-GTCTCGTATATACCTCTTAT 139742 || ||| | | ||||| || | |||| | || | | || ||||| || || || Sbjct 20664 CCTCCGGCCCACTTGGAGATGCACGCGCACT-GCTTGAGCGTGTCGTAAATGCCCTCAAT 20722 Query 139743 GCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGC 139802 |||||||||||| | | ||| || || ||||| || ||||| | ||||||||| Sbjct 20723 CGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGCGTGCCGGC 20782 Query 139803 TGCAAACAGAGTAGGACTCGCGTGCGT---GAACATTTGTTTCGACATCAATTCGTACGT 139859 ||| || || || |||||||||| |||||| ||| ||||| | || ||||| Sbjct 20783 GTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGT---GACATGAGCTCATACGT 20839 >seq120 Length=50941 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || || || || || ||||| || || || | | Sbjct 30839 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 30898 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || || ||||||||||| || || || || ||||| || Sbjct 30899 GACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 30958 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || ||||||||||| | | || || || ||| Sbjct 30959 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 31018 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||||||||| |||| |||| || ||| Sbjct 31019 ATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTGCGTGGTGGC 31066 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || || || || || ||||| || || || | | Sbjct 31067 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 31126 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || || ||||||||||| || || || || ||||| || Sbjct 31127 GACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 31186 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || ||||||||||| | | || || || ||| Sbjct 31187 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 31246 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||||||||| |||| | ||||| || Sbjct 31247 ATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTTCGCGGCGG 31293 >seq1131 Length=8162 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||||| || ||||| | || Sbjct 4577 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTAGAGCCGTCC 4518 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| ||||| || || || || || Sbjct 4517 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAG 4458 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || ||||||| ||||| || ||||| ||||| Sbjct 4457 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGA 4423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449871134773680