Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933315.1_202017-01-04] 4,706 sequences; 39,039,515 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq162 129 1e-24 seq120 111 3e-19 >seq162 Length=44331 Score = 129 bits (142), Expect = 1e-24 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || |||||| || | |||||| |||||||| ||||| || || || || Sbjct 11444 TACCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGC 11503 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | |||||||| || || || ||||| || || || | || || || || | Sbjct 11504 TCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCG 11563 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || |||||||| || ||||| || ||||| || || || |||| || || || Sbjct 11564 GGATGCCTTCCTTGTCCTGAATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCC 11622 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || ||||||||||| ||||| ||||| ||||| |||||||| Sbjct 11623 ACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 11672 Score = 104 bits (114), Expect = 5e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | |||||| ||||| || ||||| || || || || Sbjct 11674 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 11733 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| || || || ||||| || || || | || || || || || Sbjct 11734 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 11793 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| || ||||| || ||||| || || || |||| || || || || Sbjct 11794 ATGCCTTCCTTGTCCTGAATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 11852 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798 ||||| || ||||||||||| ||||| ||||| || Sbjct 11853 GTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCAC 11888 >seq120 Length=50941 Score = 111 bits (122), Expect = 3e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || |||||||| ||||| || ||||| || || || || Sbjct 31065 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 31006 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||| || || || || || || ||||| || | || || || || || Sbjct 31005 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 30946 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| ||||| || || ||||| || || || || | || ||| || || Sbjct 30945 ATGCCCTCCTTGTCTTGGATTTTCTGCTTC-ACGTTGTCGATGGAGTCCGAAGGCTCCAC 30887 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| ||||||||||| || || |||||||| Sbjct 30886 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 30839 Score = 109 bits (120), Expect = 1e-18 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || |||||||| ||||| || ||||| || || || || || | | ||| Sbjct 31282 ACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 31223 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || || || ||||| || | || || || || || || || ||||| Sbjct 31222 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTT 31163 Query 82715 ATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 ||||| || || ||||| || || || || | || ||| || || |||| || | Sbjct 31162 GTCTTGGATTTTCTGCTTC-ACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGA 31104 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| ||||||||||| || || |||||||| Sbjct 31103 TGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 31067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981768000115334