Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933315.1_202017-01-04] 4,706 sequences; 39,039,515 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq182 188 7e-43 seq120 91.5 1e-13 seq162 87.8 2e-12 >seq182 Length=41727 Score = 188 bits (208), Expect = 7e-43 Identities = 628/964 (65%), Gaps = 25/964 (3%) Strand=Plus/Plus Query 147459 GGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATTT 147517 ||| | ||||||||| ||||| || ||| ||| |||| || || |||||| || || | Sbjct 20054 GGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACG-TGTACTCCATAATCT 20112 Query 147518 CGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGC 147577 || ||||| |||||| | || || | || ||||| || || || ||| Sbjct 20113 CGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGG 20172 Query 147578 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA---A 147634 |||||| ||| | |||||| |||| |||| ||||| | |||| || | ||| | Sbjct 20173 CCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGA 20232 Query 147635 ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCT 147694 ||| ||| | ||| || | | || || ||| ||||| || |||||| || Sbjct 20233 ACCA---CAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCT 20289 Query 147695 CGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGAC 147754 |||||| ||| ||||||||||| |||| ||| || ||||| || || || | Sbjct 20290 CGTACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGC 20349 Query 147755 ACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACA 147814 | | || |||| || ||| ||| | || || ||| |||||||| || ||||||| Sbjct 20350 AGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACA 20409 Query 147815 GCGCGTACATAAGATCGCGCGCTT--TGCAA-TCCTCGGCGCCCATGTTGCGTTTCAAAT 147871 | ||||| | || |||||||| |||| || | | || | ||||| || | Sbjct 20410 GAGCGTAGAAGAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCG---CAGCT 20466 Query 147872 TAAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTA 147930 || | | | | | | |||||||||||| || || | ||||| ||| | || ||||| Sbjct 20467 CCAGGAACTCGA-ACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTG 20525 Query 147931 CGCTT---TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGT 147987 ||||| ||| |||||||| |||| ||| || ||| || || || | || |||||| Sbjct 20526 CGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGG 20585 Query 147988 TCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCG 148047 | ||| | | | ||||| ||| ||| | |||| ||| || | | | Sbjct 20586 ATGATCCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTG 20645 Query 148048 TGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAA---T 148104 |||| ||| |||||| || ||| | |||| || ||| ||||| | || | | Sbjct 20646 TGCATACTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACT-GCTTGAGCGT 20704 Query 148105 GTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATT 148164 ||||| | ||||| || || ||||| | | | | |||| |||||||| ||| Sbjct 20705 GTCGT--AAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGC 20762 Query 148165 TGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGA 148224 |||||| | |||| || || || || ||||| ||||||||||||| || | || Sbjct 20763 TGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGT 20822 Query 148225 CTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCG 148284 ||| | |||||| | | || | | |||||| | |||||| |||||||| Sbjct 20823 GACATGAGCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCC 20882 Query 148285 ACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATAT 148344 |||||||||| ||| ||||| || || || | || | ||| | || || || Sbjct 20883 ACGCGCATGATCATCTGCTGGGGGCGCTCCACGACCTTTCCGTTCACGCGGAAGAGGTAG 20942 Query 148345 CCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATG 148404 || ||||| || ||| | || ||||| | ||| ||||| || | |||| |||| Sbjct 20943 CCCCGCTCGAGCGTCTTGAAGCCGAAGTAGTCGTACTCAAAGTCCCGGTCGTGGATGATG 21002 Query 148405 GCCG 148408 |||| Sbjct 21003 GCCG 21006 >seq120 Length=50941 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| ||||| || | | ||||| || || |||||||||||||||| || Sbjct 31060 ACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 31001 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| |||||||| || || || || ||||| Sbjct 31000 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCC 30941 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||||| || |||| | || | | || | |||||||| || | Sbjct 30940 CTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAG 30881 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | || || || |||| || || | ||| ||||||||| Sbjct 30880 CGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 30838 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | ||||| || || |||||||||||||||| || || Sbjct 31281 CGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCG 31222 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || |||| |||| |||||||| || || || || ||||| || || Sbjct 31221 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTG 31162 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || |||| | || | | || | |||||||| || | ||| | Sbjct 31161 TCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATG 31102 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || |||| || || | ||| ||||||||| Sbjct 31101 GTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 31066 >seq162 Length=44331 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | || || || || |||||||||||||||| || Sbjct 11451 ACGCAGACGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCTCAGCGT 11510 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||| ||||| || || | | || || ||||| || || || || ||||| Sbjct 11511 GCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCC 11570 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || |||||| || |||| | || | | || | ||||||||| || | Sbjct 11571 TTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAA 11630 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||| || || |||| ||| || | || ||||||||| Sbjct 11631 GGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 11673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476583163346160