Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933315.1_202017-01-04]
4,706 sequences; 39,039,515 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq162 102 2e-16
>seq162
Length=44331
Score = 102 bits (112), Expect = 2e-16
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 140509 TACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAG 140568
|||| ||||| | | || || || || || ||||| || || || || || || ||
Sbjct 11444 TACCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGC 11503
Query 140569 ATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAG 140628
| || || || |||||||| || || ||||| || || || || ||||| ||||| |
Sbjct 11504 TCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCG 11563
Query 140629 GAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAA 140688
| || ||||| || ||||||||||| || || || || ||||| || || || || |
Sbjct 11564 GGATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCA 11623
Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| || | || | ||||| || || | || || ||||| ||||||||
Sbjct 11624 CGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 11672
Score = 89.7 bits (98), Expect = 2e-12
Identities = 144/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||| || ||||| | | || || || || || |||||||| || || || || || ||
Sbjct 11670 CATGCCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTC 11729
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| || || || |||||||| || || ||||| || || || || ||||| |||||
Sbjct 11730 GCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGG 11789
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || ||||| || ||||||||||| || || || || ||||| || || || ||
Sbjct 11790 CGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTC 11849
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713
|| || | || | ||||| || ||
Sbjct 11850 CACGTCCAAGGTGATCGTCTTGCCCGT 11876
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515163036788918
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |