Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933315.1_202017-01-04] 4,706 sequences; 39,039,515 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq162 149 1e-30 seq1131 145 2e-29 seq120 138 3e-27 seq40 86.0 1e-11 >seq162 Length=44331 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || || || || |||||||| || || || || | || ||| Sbjct 11461 AGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCT 11520 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || ||||| || |||||||| || | |||||||||||| Sbjct 11521 TCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCC 11580 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || || |||||||| ||||| | ||| || || || || | ||||||||| Sbjct 11581 TGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTC 11640 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | |||||| ||||| | |||||| Sbjct 11641 TTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 11672 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || || | || ||| Sbjct 11689 AGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCT 11748 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || ||||| || |||||||| || | |||||||||||| Sbjct 11749 TCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCC 11808 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || || |||||||| ||||| | ||| || || || || | ||||||||| Sbjct 11809 TGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTC 11868 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 || ||||| | |||||| || Sbjct 11869 TTGCCCGTCAAAGTCTTCAC 11888 >seq1131 Length=8162 Score = 145 bits (160), Expect = 2e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || |||| || || | || || || ||||||||||| |||||||| Sbjct 4390 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 4449 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || |||||||| |||| ||||||||||||||||| || || || || || || Sbjct 4450 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 4509 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 ||| |||| || || || || || ||||| ||||| ||||| || ||||| ||||| Sbjct 4510 ATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 4569 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 4570 ATCTGCAT 4577 >seq120 Length=50941 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | ||| || || ||||| || |||||||| || || || || Sbjct 31287 CGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 31228 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || |||||||||||||| |||||||| || || || ||||| || || | || Sbjct 31227 CGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCC 31168 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| ||||| || || |||||||| ||||||| ||| || || || || || Sbjct 31167 TCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGC 31108 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| | ||||| || || | |||||| Sbjct 31107 GTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 31067 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || || || || | || || Sbjct 31050 AGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 30991 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || ||||| || || | || |||||||| Sbjct 30990 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCT 30931 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || |||||||| ||||||| ||| || || || || || ||||| ||| Sbjct 30930 TGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTC 30871 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| | ||||| || || | |||||| || Sbjct 30870 TTGCCCGTCAACGTCTTCACGAAGATCTGCATGTT 30836 >seq40 Length=75234 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || |||||||||||||| || || || || || || ||| |||| || || || ||| Sbjct 39753 CCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCG 39694 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATG 211120 || ||||| ||||| |||||||| ||||| || || | ||||||||| || Sbjct 39693 AGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATTTTCTG 39644 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||| ||| || || ||||| || |||| ||| || | || || Sbjct 39924 AGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCCGTCC 39865 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 |||||||||||||| |||||||| || || || |||||||| || | |||| Sbjct 39864 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGGGGATTCCT 39814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159082108205690