Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933315.1_202017-01-04] 4,706 sequences; 39,039,515 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq120 109 5e-19 seq1131 100 2e-16 seq162 95.1 1e-14 >seq120 Length=50941 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || || || || ||| || || || |||| || Sbjct 31048 CACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 30989 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || |||||||||||||||| || | || ||| ||||| Sbjct 30988 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 30929 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||||||||| || | ||| | | | | || | ||||||||||| |||||| | | Sbjct 30928 GATTTTCTGCTTCA-CGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCT 30870 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | ||||||| ||| || || ||||| ||||| || Sbjct 30869 TGCCCGTCAACGTCTTCACGAAGATCTGCATGTT 30836 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || || || || ||| || || || |||| || Sbjct 31276 CACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 31217 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || |||||||||||||||| || | || ||| ||||| Sbjct 31216 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 31157 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||||||||| || | ||| | | | | || | ||||||||||| |||||| | | Sbjct 31156 GATTTTCTGCTTCA-CGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCT 31098 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||| ||| || || ||||| ||||| Sbjct 31097 TGCCCGTCAACGTCTTCACGAAGATCTGCAT 31067 >seq1131 Length=8162 Score = 100 bits (110), Expect = 2e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 || || || || || || | || || || |||| || ||||| ||||| || || || Sbjct 4390 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 4449 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216 || ||||||||||| | || | || || |||||| ||||||||| |||| | | | | Sbjct 4450 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTGTC 4508 Query 39217 ACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275 | | | ||| || ||| ||||||| |||||| | || |||||||| || || ||||| Sbjct 4509 AATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 4568 Query 39276 GATTTGCAT 39284 ||| ||||| Sbjct 4569 GATCTGCAT 4577 >seq162 Length=44331 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || ||||| || || || || || || ||| || || || |||| || Sbjct 11463 CACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTC 11522 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| || || || || ||||||||||| | || | || || |||||| Sbjct 11523 AAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTG 11582 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 |||||||| || | ||| | | | || || || ||||||||||| ||||| | | Sbjct 11583 AATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCT 11641 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||| || || |||||||| ||||| Sbjct 11642 TGCCCGTCAAAGTCTTCACAAAGATCTGCAT 11672 Score = 82.4 bits (90), Expect = 7e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || ||||| ||| || || || || || ||| || || || |||| || Sbjct 11691 CACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTC 11750 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| || || || || ||||||||||| | || | || || |||||| Sbjct 11751 AAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTG 11810 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 |||||||| || | ||| | | | || || || ||||||||||| ||||| | | Sbjct 11811 AATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCT 11869 Query 39254 TTCCCGTCA 39262 | ||||||| Sbjct 11870 TGCCCGTCA 11878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429520963680578