Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933315.1_202017-01-04] 4,706 sequences; 39,039,515 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq162 158 3e-33 seq120 156 1e-32 seq1131 120 7e-22 >seq162 Length=44331 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || ||||| || |||| ||||| ||| || || Sbjct 11451 ACGCAGACGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCTCAGCGT 11510 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| |||||||| |||||||| || || || || ||||| ||||| || || Sbjct 11511 GCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCC 11570 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || || || |||||||| ||||| | ||| || | |||||||| || Sbjct 11571 TTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAA 11630 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||||||||||||||||||||| || Sbjct 11631 GGTGATCGTCTTGCCCGTCAAAGTCTT 11657 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| ||| || || Sbjct 11679 ACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 11738 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| |||||||| |||||||| || || || || ||||| ||||| || || Sbjct 11739 GCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCC 11798 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || || || |||||||| ||||| | ||| || | |||||||| || Sbjct 11799 TTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAA 11858 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||||||||||||||||||||| || Sbjct 11859 GGTGATCGTCTTGCCCGTCAAAGTCTT 11885 Score = 96.9 bits (106), Expect = 8e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 225601 GGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTT 225660 ||||| || ||||||||||| || || || |||||||| ||||| | ||| || | Sbjct 12016 GGCGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGC 12075 Query 225661 TCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||||| || ||||||||||||||||||||||| || | ||| | ||||| || Sbjct 12076 TCCACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTT 12131 >seq120 Length=50941 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||| || | ||| || || || || || |||| ||||| ||| || || Sbjct 31287 CGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 31228 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| || || || ||||||||||| || || Sbjct 31227 CGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCC 31168 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||||||||| || |||||||| ||||||| ||| || | |||||||| | | Sbjct 31167 TCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGC 31108 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||||||||| || || | ||| | ||||| Sbjct 31107 GTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 31067 Score = 154 bits (170), Expect = 4e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | ||| || || || || || |||| ||||| ||| || || Sbjct 31060 ACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 31001 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||||||||| || || Sbjct 31000 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCC 30941 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||| || |||||||| ||||||| ||| || | |||||||| | Sbjct 30940 CTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAG 30881 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||||||||||||| || || | ||| | ||||| || Sbjct 30880 CGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGTT 30836 >seq1131 Length=8162 Score = 120 bits (132), Expect = 7e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || ||||| |||||||| |||||| Sbjct 4420 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCTTCC 4479 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||||| ||| || ||| |||| || | || ||||| | |||| Sbjct 4480 TTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCGGACGGCTCTACGTCCAGCGTG 4539 Query 225676 ATCGTCTTGCCCGTCA 225691 || ||||||||||||| Sbjct 4540 ATGGTCTTGCCCGTCA 4555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192459295585964