Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933315.1_202017-01-04] 4,706 sequences; 39,039,515 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq96 102 3e-17 >seq96 Length=55162 Score = 102 bits (112), Expect = 3e-17 Identities = 190/274 (69%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 31005 CCATGCACATGTGTCGCGCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGA 31064 ||||||||||||| |||| || || || | |||||||||| || | | | | Sbjct 36114 CCATGCACATGTGGGTGGCCTCGATCACAACGGCCACGCCCTTGGGCTCAATGACGCCCA 36173 Query 31065 ACAGTGCGTCCGCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACA 31124 | ||| |||||||| | ||||| || |||||||| ||||| ||||| | | | | Sbjct 36174 TGATGGCGGTGGCGATCTGCTTGGTGAGGCGCTCCTGCACCTGCAGACGGCGCGAAAAGA 36233 Query 31125 TGTCCGCCAGGCGGGACAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTGA 31184 || || ||| | |||||||| ||||||| | ||||| || ||||| | || Sbjct 36234 CCTCGCTCACGCGCGCGAGCTTGCTGAGGCCCAGCACTTTGCCGTTGGGGATGTAACCGA 36293 Query 31185 TCGTG-ACCGTGCCGAAGATCGGCGCGAGGTGATGCTCGCA-ATGTGAGTAGATGGGGAT 31242 | ||| ||| |||| || |||| | | ||| |||||||| ||| ||||| | | ||| Sbjct 36294 T-GTGCACCTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATG-GAGTACAGGTCGAT 36351 Query 31243 GTCGCGCACCGTCACCATCTGGTCATGCTTCTCC 31276 ||| ||||| | ||||||| ||| || | |||| Sbjct 36352 GTCCCGCACGATGACCATCTCGTCGTGGTCCTCC 36385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187279133554816