Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933315.1_202017-01-04] 4,706 sequences; 39,039,515 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq120 178 3e-39 seq162 154 3e-32 seq1131 136 8e-27 seq326 109 1e-18 seq40 109 1e-18 >seq120 Length=50941 Score = 178 bits (196), Expect = 3e-39 Identities = 180/232 (78%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || |||| || | ||| || || |||||||||||||| Sbjct 31065 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 31006 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||||| ||| || ||||| ||| Sbjct 31005 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 30946 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||||||||| || ||| || ||| | ||||| | |||||||| || || Sbjct 30945 ATGCCCTCCTTGTCTTGGATTTTCTGC-TTCACGTTGTCGATGGAGTCCGAAGGCTCCAC 30887 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || ||||| ||||| |||||||| ||||| ||||| |||||||| ||| Sbjct 30886 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGTTC 30835 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||| || | ||| || || |||||||||||||| Sbjct 31293 CCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 31234 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||||| ||| || ||||| ||| Sbjct 31233 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 31174 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||||||||| || ||| || ||| | ||||| | |||||||| || || Sbjct 31173 ATGCCCTCCTTGTCTTGGATTTTCTGC-TTCACGTTGTCGATGGAGTCCGAAGGCTCCAC 31115 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 31114 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 31067 >seq162 Length=44331 Score = 154 bits (170), Expect = 3e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||| || || ||||| || | ||| ||| || |||||||||||||| Sbjct 11445 ACCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCT 11504 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| || || || || || || || || |||| || || |||||| ||| Sbjct 11505 CAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 11564 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || || |||||||| || || || ||| || ||| | ||||| | |||||| | || | Sbjct 11565 GATGCCTTCCTTGTCCTGAATTTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCA 11623 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || | ||||||||||| |||||||||||||| || || |||||||| Sbjct 11624 CGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCAT 11672 Score = 134 bits (148), Expect = 3e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 11674 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 11733 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| || || || || || || || || |||| || || |||||| ||| Sbjct 11734 AGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 11793 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| || || || ||| || ||| | ||||| | |||||| | || || Sbjct 11794 ATGCCTTCCTTGTCCTGAATTTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCAC 11852 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || | ||||||||||| |||||||||||||| || Sbjct 11853 GTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCAC 11888 Score = 89.7 bits (98), Expect = 1e-12 Identities = 92/118 (78%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 282989 CGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTT 283047 ||| || || |||||||| || || || ||||| ||| | ||||| | |||||| | | Sbjct 12018 CGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCT 12076 Query 283048 CGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCAT 283105 | || || | ||||||||||| |||||||||||||| ||||| |||||||| || || Sbjct 12077 CCACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTTGAT 12134 >seq1131 Length=8162 Score = 136 bits (150), Expect = 8e-27 Identities = 145/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||||||||||| ||||| || || || ||||| |||||| Sbjct 4390 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 4449 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | || || |||||| |||||| || |||||||| ||||| || ||| || || | || Sbjct 4450 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGC-TTGACATTGTC 4508 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||| || | || || || || ||||| ||||| ||||||| ||||| || || Sbjct 4509 AATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 4568 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 4569 GATCTGCAT 4577 >seq326 Length=29670 Score = 109 bits (120), Expect = 1e-18 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 317029 GGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCA 317088 ||||| || || | ||||||||| || || | |||||| |||||||| ||| ||| Sbjct 13584 GGGAAGCCCTCGAGCTGACCGTTGGAGATAGCGCGCATCAGAGTCGACTTACCACAACCG 13525 Query 317089 TTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGA 317148 ||||||||||| ||||| || || | || ||||| || |||| ||||||||| Sbjct 13524 TTGGGGCCGCACAGACCGTAACGGTGGCCACGCTTCAAGCGAAGGCGGGCGTTGTTCAGC 13465 Query 317149 AGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCC 317196 |||||| ||||||| || || || ||||| || || | ||||||||| Sbjct 13464 AGAATCATACCACCGTAGGCAAGCGAGAATTCGCAGTTGCACAGGTCC 13417 Score = 96.9 bits (106), Expect = 7e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| |||||||| ||||||| ||||||||||| || | ||| ||| || Sbjct 14442 TCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTCGCGGTCTCGTCGAGG 14383 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 ||| ||| |||||||||||||||||||| ||||| || || | |||||| || ||| Sbjct 14382 TGAGACTCAATGTGGTGGAAAGCGTGCTGGGCCACATAGGCGAAACGCATGGAAGGGTGC 14323 Query 316282 TTCCAAAC 316289 ||||| || Sbjct 14322 TTCCACAC 14315 >seq40 Length=75234 Score = 109 bits (120), Expect = 1e-18 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || ||||| || | |||||| || || || ||||||||||| | Sbjct 39940 ACCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGA 39881 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 ||| |||||||| ||||| || || || ||||| ||||||| ||| || |||||| Sbjct 39880 AAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCA 39826 Score = 86.0 bits (94), Expect = 1e-11 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 282994 TACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||| ||||| || ||||| || | || || ||||||| | || || Sbjct 39755 TACCCTCCTTGTCCTGGATTTTCTGCTTG-ACATTGTCAATGCTGTCCGACGGCTCCACG 39697 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 ||||| ||||| ||||| ||||| | ||||| ||||| |||||||||||| Sbjct 39696 TCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATTTTC 39646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046676086205724