Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933325.1_202017-01-04] 4,802 sequences; 38,990,680 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3552 410 2e-109 seq179 399 4e-106 >seq3552 Length=1496 Score = 410 bits (454), Expect = 2e-109 Identities = 616/865 (71%), Gaps = 15/865 (2%) Strand=Plus/Plus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || | || ||| | ||| ||||||||||||||| || || |||||| || Sbjct 401 GATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCGTCGTTCTGGACGGC 460 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403 ||||||| | ||||||| | ||| | | ||||| | ||| | || ||||| Sbjct 461 CGAGGAGCTGGACCTGGTGCACGACCTGAAGGACTGGGGGAACCTGACGGACAACGAGCG 520 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 ||| |||| || | || || |||||||| ||| |||||||| || || ||||| Sbjct 521 CCACTTCATCAAGCACGTGCTAGCATTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAA 580 Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCT 42522 |||||| | | |||| || |||||||| || | ||||| |||||||||||||||| Sbjct 581 CCTGGCGATGAACTTCAGCAATGAGGTGCAAGTGCCG-GAGGCTCGCTGCTTCTACGGCT 639 Query 42523 TCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACA 42582 ||||||| ||||| |||||| | ||||| ||||||||| | ||| || ||||||||| Sbjct 640 TCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACTCGCTGCTGATCGACACGTACA 699 Query 42583 TCCTGGATCCCGTCGAGCG---TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCA 42639 || ||| |||| ||| | || |||| ||||| |||||||| || ||| Sbjct 700 TCAAGGACGCCGTGGAGAAGGATCACTTGCTGCGT---GCCATCGAGACGATCCCGTGCG 756 Query 42640 TCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCG 42699 | |||||||||| |||||||||||| ||| || || | | | | | | Sbjct 757 TGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGACCCTCGTGTTTCGTCCTACCCGG 816 Query 42700 AGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCA 42759 || | ||| | || || ||||||| |||||||| ||||||||||| ||||| ||||| Sbjct 817 AGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTTCTTCTCGGGTTCCTTCTGCTCCA 876 Query 42760 TCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATC 42818 |||||||||||||| || || || ||||| || || | |||||||||||| |||||| Sbjct 877 TCTTCTGGCTCAAGAAGCGCGGCCTC-ATGCCTGGTCTGAGCTTCTCGAACGAGCTCATC 935 Query 42819 AGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGG 42878 ||| |||||||||| |||| | |||||| || |||||| ||| ||||| | | | Sbjct 936 AGCCGGGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTCGA---AGTTGGTG 992 Query 42879 CACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAG 42938 |||||| || || || || | || ||| | || || |||| ||| ||| | Sbjct 993 AACAAGCTGCCGGAGAGCCGCGTGCACGCGATCGTGCGTGACGCTGTGGTGATTGAGCAC 1052 Query 42939 GAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGC 42998 |||||| | | | ||||| |||||| ||| ||||||||||| | ||||||||| Sbjct 1053 GAGTTCGTGAGCGACTCGCTCCCCGTGGAGCTGATCGGCATGAACTCTGCGCTCATGTGC 1112 Query 42999 AAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCC-GCCTCTA 43057 |||||||| ||| ||| ||||||| || |||| | ||||| || || |||| Sbjct 1113 CAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCACTGGGT-GCATCCAAGATCTA 1171 Query 43058 CAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTT 43117 |||| | | ||| ||||||| ||||| | |||||| || |||||||||||||||| Sbjct 1172 CAACGTGAAGAACCCGTTCGACTGGATGGATATGATCTCGCTGCAGGGCAAGACCAACTT 1231 Query 43118 TTTCGAGAAGCGCGTCGCCGACTAC 43142 |||||||||||||| | ||| ||| Sbjct 1232 CTTCGAGAAGCGCGTGGGCGAGTAC 1256 >seq179 Length=41754 Score = 399 bits (442), Expect = 4e-106 Identities = 1417/2170 (65%), Gaps = 102/2170 (5%) Strand=Plus/Plus Query 243735 CCACGCTGAACTGGACGGGTGCGACGGCGGCCTTG-GTCCTC--AGGTAGTACATGCCGG 243791 ||||| ||||||||| || || |||| | | |||| | | |||||||||||| | Sbjct 19174 CCACGGTGAACTGGATGG---CGTCGGCTTTCGGGCGTCCGCGCATGTAGTACATGCCCG 19230 Query 243792 TCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCT 243851 ||||||| || | |||||||| || |||||||| ||||||||| | ||| | Sbjct 19231 TCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAGCTTGCTAATCGTC---- 19286 Query 243852 TTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC- 243910 |||||| ||| | | | ||| || |||||||||||| | | ||| |||| Sbjct 19287 --GGGTCG-----GCAATGTGA-ATGTTCAGCGACTGGCTCTGGCAAATGTAGG-CGCCA 19337 Query 243911 CGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATG 243970 || || || | || | | | | ||||||| ||||| || |||||||||| | Sbjct 19338 CGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTC 19397 Query 243971 GGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGC 244030 ||||| || || || | || | |||||||| ||||| || | | | | Sbjct 19398 TCCTTGACCTGGTCCGGAATGGATTTCACCTTCTGCACGGAGCCACCGTCAGCCAGAATC 19457 Query 244031 TGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTC---CAGCGCCTCGACCAGGTGC 244087 ||| |||||| | | |||| | ||||| |||| |||| ||| | |||| | Sbjct 19458 TGGTTGCGCACCTCAGGCGTCCAGATGCCCA---GCTCGATCAGCTCCTTCATGAGGTAC 19514 Query 244088 CTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGC 244147 ||||||| | | ||||| || | |||||||||||| | ||| | ||| || | Sbjct 19515 TTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTAC 19574 Query 244148 GGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGAC 244207 ||||||||| ||| ||||||||| ||||| ||||| |||||| ||||| || | | Sbjct 19575 GGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCC 19634 Query 244208 ACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATG-CGGAGTC--TGAGCTCGTTCCAG 244264 || || || ||| | | ||||||| | ||| || || ||||| | ||| Sbjct 19635 ACGAGGAGCGAGTTGCGGATGCCGTGCTT---GATCACGTTCTCCTTGAGCGCAGCCCAA 19691 Query 244265 TCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCC 244324 ||||||| |||||| || || | | || |||||||||||| ||||| | | ||| Sbjct 19692 TCCCACAAGCCCGA-AGA----CGGGGT-GACGCCCCACATGTCGAACTGGAAGATACCC 19745 Query 244325 TTGCTGACGGGGCTGCCCTCGTAGGTCGGGTA-GGGACCGTCGCGCTGGGCCAGCT---T 244380 |||||| | || |||| | | ||| ||| ||| || | | || ||| | || | Sbjct 19746 TTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCCCAGCTC-CTTGGCGATCTCCAT 19804 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCG 244440 || |||| | | ||||||||||| ||||||||||| || |||| | || || Sbjct 19805 CGAGGTCTCC---ATAGAAGCGTAGTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACG 19861 Query 244441 GGCCTTGCCGCAGGTGAAGGGGAT-GCCCATCATCATGAAGACGTCGGCCAGTCCCTGCA 244499 ||| |||| | | | | || | ||| | || || | || || || ||||| | Sbjct 19862 GGC-TTGCGGGCTCTCGAACGCATAGTTCATGAGGATAAATGCATCCGCGAGACCCTGGA 19920 Query 244500 CGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA---GCGCATGGCTTCGGGCACGGGGT 244556 |||| || || | || | ||| ||| ||||||| |||| || || |||||||| Sbjct 19921 CGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGC---GCCTCCTCCACGGGGT 19977 Query 244557 AAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCA 244616 | ||||| |||| || |||||||| | ||| ||||| | || | || ||| || Sbjct 19978 AGTAGTTGACGTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTGGTCACCTCGTACA 20037 Query 244617 GCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTC-ACAAACTCGTTG 244675 || ||| ||| | || | ||| |||||| ||||||| | | Sbjct 20038 GCTTCTGGTAGTTGAACAC-------TCC------------ATCCTCCACAAACTTGGGG 20078 Query 244676 AGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATC 244735 ||||| || ||||||||||| || |||||||| || | ||||||| | |||| Sbjct 20079 AGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATC 20138 Query 244736 TCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTG 244795 ||| ||| | ||| || | ||| ||||| |||| ||| || || |||||| |||| Sbjct 20139 TCGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTG 20198 Query 244796 CAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTG 244855 ||||||||||| |||||||| ||| | || ||||| | ||| ||| | |||| | | Sbjct 20199 GCCGCGTCCTTGTACAGCATGAACGGCACACCCGTCTCAATCTGCGCGTCCAGGATGGCG 20258 Query 244856 TTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTG 244915 ||| || | | || |||| |||| |||| || ||||| |||||| | Sbjct 20259 AACCACAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCTCG 20318 Query 244916 TACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCAC 244975 ||||| | |||||||||| ||||||| ||||| || |||||| | ||||| Sbjct 20319 TACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAG 20378 Query 244976 ATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGG 245035 | || ||||||| |||| | | || | || |||||| || ||||||| ||| || Sbjct 20379 AAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGA 20438 Query 245036 GCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAA 245095 || | ||||||||| | | | ||| || ||| |||||| | |||||||| Sbjct 20439 GCGTAGAAGAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGCTCCAGG 20498 Query 245096 AAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTG 245155 || || || |||||| ||||||| ||||||| ||||| |||| | ||| |||||| Sbjct 20499 AACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTG 20558 Query 245156 TTGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTAT 245214 |||||||||||||| | | || | | ||||||| | ||| | || | || Sbjct 20559 CCTCCTCCCTGGTCCACATAGCGGGCCGTG-TCATTGAAGACCCTCAGCATGGGGATGAT 20617 Query 245215 GCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGAT 245274 ||||| || ||||| ||||| ||||||| | | || | | || |||| || Sbjct 20618 CCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCAT 20677 Query 245275 GGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGC 245334 | ||||| | || ||||| |||||||||| ||||| ||||| ||||| Sbjct 20678 GCTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTA 20737 Query 245335 TATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTT 245394 |||||||| || ||| || |||| ||||| || || || |||||||| || Sbjct 20738 AATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACG 20797 Query 245395 GGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCT-CGAGAGGA 245453 || ||| | ||| || || ||||| | ||||| |||||| | | || || | || Sbjct 20798 CGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAG-AACATCTGTGACATGA 20856 Query 245454 ACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTC 245512 | | ||||| || || || | ||||| | ||| || ||| || ||| | | Sbjct 20857 GCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGC-CACGCGC 20915 Query 245513 ATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCT-CGGGTC-CCTTGAGCATGTAGGAGC 245570 |||| | |||||||| ||| | | || | | | || | || | |||| | Sbjct 20916 ATGATCATCTGCTGGGGGCGCTCCA--CGACCTTACCGTTCACGCGGAAGAGGTAGCCTC 20973 Query 245571 GCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTG 245630 |||| ||||||||||| || ||||| ||| ||||||| || ||| ||| ||| | Sbjct 20974 GCTCAAGCGTCTTGAAGCCGAAGTAGTCGTACTCAAAGTCCCGGTCGTGGATGATGGCCG 21033 Query 245631 CGTCGAGTCTC-TCGGCGTGCTTC-TGACTGACCTCGTAAAACTTTTGCGCTATGAGGGG 245688 || || ||| || ||||| | | || || | | || | | | || ||||| || Sbjct 21034 AGTTAAG-CTCGTCCTTGTGCTCCATCAC-GAGCGCATACACGTCGTCGGCGATGAGTGG 21091 Query 245689 AGCC-CTGAGCCCG--GTGTCCGGATTGACGTTGAACCAGAGCCTC----TTGCACACCT 245741 ||| | | ||||| | || | || ||| ||| |||| ||| ||| Sbjct 21092 CGCCGCGGCGCCCGTCTTCTCGTGCGTGTTCTTGTGGAAGA-CCTCGATGTTG-TCAC-- 21147 Query 245742 CCGAGAACTTGGGGCTGGTGAGCTTATGCAGGTTGGTGACTGCTATGCGCGCCGCCAACT 245801 ||| ||| | | ||| ||| |||||||||| || || ||||||||||||| || Sbjct 21148 TGAAGACCTT---GTTCGTGTTCTTGTGCAGGTTGGACACGGCGATGCGCGCCGCCAGCT 21204 Query 245802 TGCTGTAGTCGGGGTGAGTGGTGGTCATGTTGGAGGCCGTGTGGGCCAGCAGCTCGTCAA 245861 || | |||| ||||| ||| || || | |||||| | ||| ||||||||| | Sbjct 21205 TGGAGAAGTCTGGGTGCTGCGTGCTCTGGTACGCGGCCGTCTCGGCGGCCAGCTCGTCCA 21264 Query 245862 TCTCGGACGT 245871 ||||||||| Sbjct 21265 GCTCGGACGT 21274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944282516039520