Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933325.1_202017-01-04] 4,802 sequences; 38,990,680 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq179 372 3e-98 >seq179 Length=41754 Score = 372 bits (412), Expect = 3e-98 Identities = 1108/1697 (65%), Gaps = 55/1697 (3%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || || || || || || ||||| || || ||| || ||| |||| |||||||||||| Sbjct 20830 GCGACGCCCACGCTCTTTAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCGTGTTTCCTG 20771 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||| |||||| || || |||| ||||| |||||| | || ||| | Sbjct 20770 CTGGCCATGCAGGACGACTCGATTGAGGGCATTTACGACACGCTCAAGCAGTGCGCGTGC 20711 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | || || || || || || || | ||| || | || |||| | | Sbjct 20710 ATCTCCAAGTGGGCCGGAGGTATTGGCATTAGCATGCACAACATCCGCGCCACGAACAGC 20651 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||||||||| || || || | |||||||| || |||| ||||| |||||||||| Sbjct 20650 TACATCCGCGGCACGAACGGATCATCCAACGGGATCATCCCCATGCTGAGGGTCTTCAAT 20591 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || |||| ||||| ||||||||||| || || | | | || || || ||||| |||| Sbjct 20590 GACACGGCCCGCTATGTGGACCAGGGAGGAGGCAAGCGCAAAGGCTCGTTCGCCATCTAC 20531 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| |||||||| |||||| | ||| | || ||||| ||||||||||||||| Sbjct 20530 CTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGAGCTGCGCAAGAACCACGGCAAC 20471 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || ||| | | || | ||||||||||||||||| ||||| || || || || ||||| Sbjct 20470 GAGCTGCACCGCGCGCGCGACCTCTTCTACGCTCTGTGGGTCCCCGATCTGTTCATGAAG 20411 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 || || || ||| | ||||| ||||| || |||||||| |||||||| | | Sbjct 20410 CGTGTGGAAGCGAACGGCAAGTGGAGCCTTTTCTGCCCCAATGAGGCCCCCGGACTCTAC 20351 Query 94372 GACGTTTGTGGATCG-CGTTTTGAAGACT-TGTATGCTCGTTACGAATCGCAGGGCAAGG 94429 || | ||| || || || ||||| |||| | ||||| | |||| | Sbjct 20350 GA--GTGCTGGGGCGACGAGTTCGAGACTCTGTACGAGAAGTACGAGAAGGAGGGGCGCG 20293 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 | | ||| || |||| | |||||||| ||| |||||| ||| | |||| Sbjct 20292 CGCGCAAGACGATCAATGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCGCAGATTGAGA 20233 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 ||||| ||| | ||| ||| ||||||| | | |||| |||||| ||||||||| ||| Sbjct 20232 CGGGTGTGCCGTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCGAACCAGCAGAACC 20173 Query 94550 TCGGGGTGATCAAGAGCTCG---AATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 |||| |||| ||||| || ||||| ||||||| | ||||| || || || | Sbjct 20172 TCGGCACGATC---CGCTCGAGCAACTTGTGCTGCGAGATTATGGAGTACACGTCGCCCG 20116 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCT 94666 | ||| | || ||||| ||||||| || | ||| ||| || ||| |||| Sbjct 20115 ATGAGGTGGCGGTGTGCAACCTGGCGTCTGTGGCCCTCCCCAAGTTTGTGGAGGATG--G 20058 Query 94667 ACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGT-- 94724 | || ||| | | ||| | ||| |||| | |||| |||| Sbjct 20057 AGTGTTCAACTAC----CAGAAGCTGTACGAG---GTGACC--------AAGG-TGGTGA 20014 Query 94725 -CTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACT 94783 | |||| |||||| ||| || ||| |||| ||||||||| ||||||| || | Sbjct 20013 CCCGGAACTTGAACAAGGTCATTGACGTCAACTACTACCCCGTGGAGGAGGCGCGCAAGT 19954 Query 94784 CAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGA 94843 | ||| || || || || | || || |||||||||||| ||||||| || | | Sbjct 19953 CCAACATGCGCCACCGCCCGGTTGGTATTGGCGTCCAGGGTCTCGCGGATGCATTTATCC 19894 Query 94844 TGATG-CGTCTGCCCTACGACTCTGTCGACGC-GGCGGGT---TTGAATTTGAACATATT 94898 | ||| | || | | ||| | ||| || || | || ||||||| || Sbjct 19893 TCATGAACTATG-CGTTCGA----GAGCCCGCAAGCCCGTGAACTCAACATGAACATCTT 19839 Query 94899 CGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGG 94958 ||| | || || |||| | ||| | || | | | |||| ||| || Sbjct 19838 CGAGACGATCTACTACGCTTCTATGGAGACCTCGATGGAGATCGCCA---AGGAGCTGGG 19782 Query 94959 GCCACACGAATCGTTCCGCGGATCGCCCTTGGAAC-AGGGCATTTTTCAGTTCGACCTCT 95017 || |||| |||||| |||||| ||| | | |||| || || ||||||||| | | Sbjct 19781 CCCGTACGAGACGTTCCAGGGATCG-CCTGCCAGCAAGGGTATCTTCCAGTTCGACATGT 19723 Query 95018 GGGGTGTGA---AGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCA 95074 |||| || | | | ||||| ||| || |||| || || | | || |||| Sbjct 19722 GGGGCGTCACCCCGTCTTCGGGCTTGTGGGATTGGGCTGCGCTCAAGGAGAACGTGATCA 19663 Query 95075 AACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGA 95134 | ||||| | ||| |||| || ||||| || |||||||| || || ||||| |||| Sbjct 19662 AGCACGGCATCCGCAACTCGCTCCTCGTGGCTCCGATGCCCACTGCGTCGACGGCTCAGA 19603 Query 95135 TCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGC 95194 | | |||||||| ||||| |||| || | ||| || ||| |||||||| | || |||| Sbjct 19602 TTTTGGGCAACAATGAGTCCATCGAGCCGTACACGTCGAACATGTACAACCGCCGCGTGC 19543 Query 95195 TCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTG 95254 | || || || ||| | || | |||||| ||||| | ||| |||| ||||| Sbjct 19542 TGGCTGGTGAGTTCACGATCGTGAACAAGTACCTCATGAAGGAGCTGATCGAGCTGGGCA 19483 Query 95255 TGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCC 95314 | ||| |||| ||||| | || | | |||||||| ||||| | Sbjct 19482 TCTGGACGCCTGAGGTGCGCAACCAGATTCTGGCTGACGGTGGCTCCGTGCAGAAGGT-- 19425 Query 95315 CGCAA---ATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGC 95371 | || || ||||| | |||||| | |||||||| |||||||||||| |||| Sbjct 19424 -GAAATCCATTCCGGACCAGGTCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGA 19366 Query 95372 GCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNN 95431 | | | |||| |||| | ||| || ||| ||| |||||||| Sbjct 19365 AGGCCGTGTTGGACCTGTCGGCGGACCGTGGCGCCTACATTTGCCAGAGCCAGTCGCTGA 19306 Query 95432 NNNNNNNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGA 95491 || ||||| || | | || | ||||||||| ||||||| |||| Sbjct 19305 ACATTCACATTGCCGACCCGACGATTAGCAAGCTGACGTCCATGCACTTCTACGCCTGGA 19246 Query 95492 GAAAGGGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATAC 95551 ||||| |||||||| || ||||| || |||| | || || || ||| |||| | Sbjct 19245 AGAAGGGGCTCAAGACGGGCATGTACTACATGCGCGGACGCCCGAAAGCCGACGCCATCC 19186 Query 95552 AGTTCGCCCTAGAAAAG 95568 ||||| || | || ||| Sbjct 19185 AGTTCACCGTGGACAAG 19169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494693504239920