Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933325.1_202017-01-04] 4,802 sequences; 38,990,680 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq179 190 3e-43 seq3552 168 1e-36 >seq179 Length=41754 Score = 190 bits (210), Expect = 3e-43 Identities = 414/610 (68%), Gaps = 15/610 (2%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCT---CAGATAGTACAT 203895 ||||||||| |||||||| ||||||| |||| | || || || |||||||| Sbjct 19169 CTTGTCCACGGTGAACTGGATGGCGT---CGGCTTTCGGGCGTCCGCGCATGTAGTACAT 19225 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||| ||||| || ||||||| ||| |||| | ||||||||| | ||| ||||| | | Sbjct 19226 GCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAGCTTGCTAATCGT 19285 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 |||||||| |||||||||||||| |||||||| ||| ||| ||||||| || || | Sbjct 19286 CGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATG-TAGGCGCCACGGTCCG 19344 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | | || | | | || ||||||| |||||||||||||||||| || || || Sbjct 19345 CCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTGA 19404 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT-CAT 204132 || | || | || ||| | ||| | ||||| ||| |||| | ||| | Sbjct 19405 CCTGGTCCGGAATGGATT-TCACCTTCTGCACGGAGCCACCGTCAGCCA-GAATCTGGTT 19462 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | | ||| | ||| ||||||| | |||||||||| || |||| ||| | Sbjct 19463 GCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATGAGGTACTTGTTCAC 19522 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 |||| || || || | |||||| | ||| || ||| ||| ||| | || |||| Sbjct 19523 GATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTACGGCTCGAT 19582 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 | ||| |||||||| ||||||||||| || || |||||||| ||||||| ||| || Sbjct 19583 GGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCCACGAGGAG 19642 Query 204313 GGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCA---T 204369 |||||||| | |||| || || | ||| || | | ||| || || Sbjct 19643 CGAGTTGCGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGCCCAATCCCACAAGCC 19702 Query 204370 CGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCC 204429 || | || | |||||||||||||||||||| ||||| || | ||| | || || Sbjct 19703 CGAAGACGGGGTGACGCCCCACATGTCGAACTGGAAGATACCCTTGCTGGCAGGCGATCC 19762 Query 204430 CTTGTACGTC 204439 || | ||||| Sbjct 19763 CTGGAACGTC 19772 >seq3552 Length=1496 Score = 168 bits (186), Expect = 1e-36 Identities = 487/740 (66%), Gaps = 21/740 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || || || ||||| | |||| ||||| Sbjct 1241 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATCCAGTCGAACGGGTT 1182 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||||||| ||| ||| | || || | ||||| | ||| ||||| || || Sbjct 1181 CTTCACGTTGTAGATCTTGGATGCACCCAGTGAGTACAGCAGGCGGTCGGCCACGAACTC 1122 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| || || |||| || || | |||| |||||||||| || Sbjct 1121 GATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCACGGGGAGCGAGTCGCT 1062 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG-ACACGTTCGTACC 159887 || ||||| | ||||||| | || || || ||| ||| ||| | || || | | Sbjct 1061 CACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATC-GCGTGCACGCGGCTCTCCG 1003 Query 159888 CCGGCTTGCCCA--AAATGTG-GTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | ||||| || || | | || ||| ||||||||| ||||| ||||| | Sbjct 1002 GCAGCTTGTTCACCAACTTCGAGT------ACATGAGGCACGCGAAGTCCGTGTGCATGC 949 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 |||||||||| ||||| |||||| || | | | || || ||||||| || ||| | Sbjct 948 CCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTCT 889 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| || |||| ||| ||| | | | | || || || ||||||||||| || ||| Sbjct 888 TGAGCCAGAAGATGGA-GCAGAAGGAACCCGAGAAGAAAATGCCCTCCACGGCGGCGAAC 830 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTC-CACCTTTTG---GCCCA 160119 |||| || | ||| | || | | ||||| |||| ||| ||||| Sbjct 829 GCCAGCAGACGCTCCGGGTAGGACG----AAACACGAGGGTCACACCACTTGAGCGCCCA 774 Query 160120 TTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTC 160179 |||||||| | | |||||| || ||||| ||| | ||| |||| ||| Sbjct 773 GCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAGCAAGTGATCCTTCTC 714 Query 160180 CTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTC 160239 | | |||||||| || | |||||| |||||||| || | ||| | || || Sbjct 713 CACGGCGTCCTTGATGTACGTGTCGATCAGCAGCGAGTACACCTCCGAGTGGATGTTCTC 654 Query 160240 GATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAA 160299 |||||| ||||| ||| |||||| | |||||| | |||||||| | |||| Sbjct 653 GATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACTTGCACCTCATTGCTGAA 594 Query 160300 CCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTG 160359 | |||| || | || || | |||||| ||| || ||||| || | |||||| Sbjct 593 GTTCATCGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAATGCTAGCACGTG 534 Query 160360 AGAGATGAAATGTCTCTCGT 160379 |||||| || | ||||| Sbjct 533 CTTGATGAAGTGGCGCTCGT 514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795107470809120