Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933325.1_202017-01-04] 4,802 sequences; 38,990,680 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq179 147 3e-30 seq3552 122 1e-22 seq340 89.7 6e-13 >seq179 Length=41754 Score = 147 bits (162), Expect = 3e-30 Identities = 730/1142 (64%), Gaps = 39/1142 (3%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 75185 ||||||| ||| | | ||||| || |||| || |||||| |||| ||||| | Sbjct 21016 CGGGACTTTGAGTACGACTACTTCGGCTTCAAGACGCTTGAGCGAGGCTACCTCTTCCGC 20957 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 | | | || | || |||| ||| ||| | ||| ||||||| || || | || | Sbjct 20956 G--TGAACGGTAAGGTCGTGGAGCGCCCCCAGCAGATGATCATGCGCGTGGCGCTGGGTA 20899 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 75305 | ||| | ||||||| | | | || | || || || ||||| || |||| Sbjct 20898 TTCACAAGCAAGACATCCAGGCGGCACTGCACACGTATGAGCTCATGTCACAG---ATGT 20842 Query 75306 TCATT---CACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCA 75362 || || ||||| || || || ||||| || || || || || | |||||| |||| Sbjct 20841 TCTTTACGCACGCGACGCCCACGCTCTTTAACGCCGGCACGCCGCGTCCGCAGCTGTCGT 20782 Query 75363 GTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGG 75422 || ||||| | |||| |||| ||||| || | || || || | || || | | Sbjct 20781 CGTGTTTCCTGCTGGCCATGCAGGACGACTCGATTGAGGGCATTTACGACACGCTCAAGC 20722 Query 75423 AGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAG 75482 |||| ||| ||||| |||||||| || |||||||| || ||| || | | | | Sbjct 20721 AGTGCGCGTGCATCTCCAAGTGGGCCGGAGGTATTGGCATTAGCATGCACAACATCCGCG 20662 Query 75483 CCAATAA-ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTT 75541 ||| || | || || || || || || || ||| | || || || || ||||| Sbjct 20661 CCACGAACAGCTAC-ATCCGCGGCACGAACGGATCATCCAACGGGATCATCCCCATGCTG 20603 Query 75542 CGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCC 75598 | || || || | ||| || |||||||| | || | || | ||||| || || Sbjct 20602 AGGGTCTTCAATGACACGGCCCGCTATGTGGACCAGGGAGGAGGCAAGCGCAAAGGCTCG 20543 Query 75599 ATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTC 75658 |||| ||||| |||| || ||||| ||||| | | |||||||| ||| | || Sbjct 20542 TTCGCCATCTACCTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGAGCTGCGCAAG 20483 Query 75659 AACCAAGGTGACGAAGAGGCTCGGTGTA-GAGATCTCTTTTCATCCCTGTGGATTCCAGA 75717 ||||| || |||| | || | | | | || ||||| | | |||||| | || || Sbjct 20482 AACCACGGCAACGA-GCTGCACCGCGCGCGCGACCTCTTCTACGCTCTGTGGGTCCCCGA 20424 Query 75718 CCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGC 75777 || ||||||||||| || || | | || | ||| |||||||| || | |||| Sbjct 20423 TCTGTTCATGAAGCGTGTGGAAGCGAACGGCAAGTGGAGCCTTTTCTGCCCCAATGAGGC 20364 Query 75778 ACCAGGTCTCTCCGA-CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAG 75836 || || |||| ||| || | ||| || ||||| || | || ||| ||||| || Sbjct 20363 CCCCGGACTCTACGAGTGCTG-GGGCGACGAGTTCGAGACTCTGTACGAGAAGTACGAGA 20305 Query 75837 AGGAGGGTAGAGC---CAATGCGA-CTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTC 75892 ||||||| | || ||| ||| | | || | || | || ||| || || || Sbjct 20304 AGGAGGGGCGCGCGCGCAAGACGATCAATGCC--CAGCAGCTG--TGGTTCGCCATCCTG 20249 Query 75893 AAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAG 75952 | | |||| ||||| || || | ||||| |||||||| || ||| ||| Sbjct 20248 GACGCGCAGATTGAGACGGGTGTGCCGTTCATGCTGTACAAGGACGCGGCCAACCGCAAG 20189 Query 75953 AGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAA--ATCTT-TGCACGGAAATTTTA 76009 ||||| |||| | || || ||| |||| | | ||| ||| || ||| | Sbjct 20188 TCGAACCAGCAGAACCTCGGCACGATC---CGCTCGAGCAACTTGTGCTGCGAGATTATG 20132 Query 76010 GAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAG 76069 |||||||| |||||| ||| || ||||| |||| || | ||||| || ||| Sbjct 20131 GAGTACACGTCGCCCGATGAGGTGGCGGTGTGCAACCTGGCGTCTGTGGCCCTCCCCAAG 20072 Query 76070 TATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATT 76129 | ||| | || | || | || | || | || || | || | || ||| | Sbjct 20071 TTTGTGGAGGATG-GAGT-----GTTCAACTACCAGAAGCTGTACGAGGTGACCAAGGTG 20018 Query 76130 GTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGA 76189 || ||| || | ||| ||||||||| || | || ||||| ||| ||||| Sbjct 20017 GTGACCCGGAACTTGAACAAGGTCATTGACGTCAACTACTACCCCGTGGAGGAGGCGCGC 19958 Query 76190 AAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTT 76249 ||||| || ||||| ||| | || ||||| | || || || ||||||||||||| |||| Sbjct 19957 AAGTCCAACATGCGCCACCGCCCGGTTGGTATTGGCGTCCAGGGTCTCGCGGATGCATTT 19898 Query 76250 AT 76251 || Sbjct 19897 AT 19896 >seq3552 Length=1496 Score = 122 bits (134), Expect = 1e-22 Identities = 350/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || | || || | ||||||||||| ||||| | || |||| |||| Sbjct 735 GCCATCGAGACGATCCCGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGAC 794 Query 65056 AC-AAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 | || ||| |||| | | ||||| || | ||||| || |||||||| || || Sbjct 795 CCTCGTGTTTCG-TCCTACCCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGCATTTT 853 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 |||||| || || |||||| | || | ||| | |||||||| || |||||||| || || Sbjct 854 CTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCT 913 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGA 65234 ||||||| || || || || ||| || ||||| | ||| ||| || | |||| Sbjct 914 GAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCG-CGTGCC 972 Query 65235 GC-TCTTCAAGACTTTGCGTAATAGACCCACTACCGAA----ACTATCCACGCCATCGTG 65289 | | | | || ||| || | || || ||| | | ||||| |||||| Sbjct 973 TCATGTACTCGAAGTTG-GTGA---ACAAGCTGCCGGAGAGCCGCGTGCACGCGATCGTG 1028 Query 65290 AAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATC 65349 || || || | ||||||| | | |||| | ||| | ||||| | || ||| Sbjct 1029 CGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGCGACTCGCTCCCCGTGGAGCTGATC 1088 Query 65350 GGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAA 65409 || |||||||||| | |||| | ||||||| |||| ||| | || || || || | Sbjct 1089 GGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTAC 1148 Query 65410 CAAGTTGGGGTGCCACC--CATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACA 65467 | | |||||| || || | |||| |||||| || || |||| ||||| | | Sbjct 1149 TCACT--GGGTGCATCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGATATGA 1206 Query 65468 TTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 | || | || |||||||||||||| |||||||| || || || || Sbjct 1207 TCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 1255 >seq340 Length=28314 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 13605 AGTGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCT 13664 |||| | || ||| | || ||||||||||| || || | || || || || ||||| Sbjct 15197 AGTGCTCGCTGATTTTGACTGAGGGTGATTCTGCCAAGGCACTGGCCGTGGCTGGTCTGG 15256 Query 13665 CTGTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAGAATGTTC 13724 | || ||||| |||||||| ||||||||||| || |||||||| ||| | ||| || | Sbjct 15257 CAGTGGTTGGACGTGATCAGTACGGTGTGTTTCCTCTTCGCGGCAAACTTCTGAACGTGC 15316 Query 13725 GGGACGCTTCGGTGGCACAGCT 13746 | || || | ||||| ||||| Sbjct 15317 GTGATGCGACTGTGGCGCAGCT 15338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596533790909760