Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933325.1_202017-01-04]
4,802 sequences; 38,990,680 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq42 104 2e-17
>seq42
Length=76411
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || | || |||||||||||| || ||||| || || || || ||||| || ||
Sbjct 56526 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 56467
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| |||||| || || || || ||||| || | |||| | ||||| || |||||
Sbjct 56466 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 56407
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| ||||| |||||||| | ||| || || || | || | | ||| ||| | || ||
Sbjct 56406 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACG 56347
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || || || ||||| || || || || || || |||||||| ||
Sbjct 56346 TCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGTT 56297
Score = 102 bits (112), Expect = 6e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
|||||||||||| || ||||| || || || || ||||| || || | ||||||
Sbjct 56743 ACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 56684
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| || || || ||||| || | |||| | ||||| || ||||| || ||||| ||
Sbjct 56683 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTT 56624
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|||||| | ||| || || || | || | | ||| ||| | || || || || || ||
Sbjct 56623 GTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGAT 56564
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| ||||| || || || || || || ||||||||
Sbjct 56563 GGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 56528
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385196655287082
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |