Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933325.1_202017-01-04] 4,802 sequences; 38,990,680 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq179 446 2e-120 seq3552 187 2e-42 seq134 145 7e-30 seq42 145 7e-30 seq847 131 2e-25 >seq179 Length=41754 Score = 446 bits (494), Expect = 2e-120 Identities = 1227/1850 (66%), Gaps = 64/1850 (3%) Strand=Plus/Plus Query 147953 GCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGA 148012 ||||| |||||||||||||||||||| ||| | ||| |||||| ||||| |||| Sbjct 19211 GCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGT 19270 Query 148013 CATGAGCGTG-TA--CGTCGGGTGCGGCACAAACAGA---TTAAACGACTGGCTCTGGTC 148066 || || || || |||||||| ||||| | || || | ||||||||||||| Sbjct 19271 CA---GCTTGCTAATCGTCGGGT-CGGCA--ATGTGAATGTTCAGCGACTGGCTCTGGCA 19324 Query 148067 AATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGC 148126 |||| | ||||||||||| || | || || | | ||| ||| |||||||| | Sbjct 19325 AATGTAGGCGCCACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACAC 19384 Query 148127 CGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCG 148186 |||||||||| | ||||| || || |||||| | | |||||| ||||| | Sbjct 19385 CGTCTTGTACTTCTCCTTGACCTGGTCCGGAATGGATTTCACCTTCTGCACGGAGCCACC 19444 Query 148187 GTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATC 148246 || || | |||||| ||||||| || ||| | | | ||||||||||| || | Sbjct 19445 GTCAGCCAGAATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTT 19504 Query 148247 GATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTT 148306 || || |||| ||||| | | ||||| || || |||||||| || |||| ||| Sbjct 19505 CATGAGGTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTT 19564 Query 148307 GCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGG 148366 ||| |||| || | ||||| ||||||||||||||||| || |||| || ||||| Sbjct 19565 CGACGTGTACGGCTCGATGGACTCATTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGG 19624 Query 148367 CATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGC 148426 ||| || || || ||||||||||| | ||| | || | | || ||| || || Sbjct 19625 CATCGGAGCCACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGC 19684 Query 148427 CGCCCAGTCCCAGAG---CGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCC 148483 ||||| ||||| | || ||||| || ||| |||||||||| |||| | || || Sbjct 19685 AGCCCAATCCCACAAGCCCGAAGACGGGGTGACGCCCCACATGTCGAACTGGAAGATACC 19744 Query 148484 GCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCA 148543 ||| || || |||| | ||| |||||| || || || || | || || Sbjct 19745 CTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTC-CA 19803 Query 148544 GCTCGC-CTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG--CAGCGC 148600 | | ||| | | ||||||| ||||||||| || | | ||||||| || | Sbjct 19804 TCGAGGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACGG- 19862 Query 148601 CGCCGACTCGCTTTCGTACGGCATACG-CAGCCGCACAAACGCGTCGGCAAGGCCCTGTA 148659 || | ||| ||| ||| |||| || | | ||| || || || || ||||| | Sbjct 19863 -GCTTGCGGGCTCTCGAACG-CATAGTTCATGAGGATAAATGCATCCGCGAGACCCTGGA 19920 Query 148660 CGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGT 148719 |||| | |||| || ||||| |||||||| |||||| ||| | || |||| Sbjct 19921 CGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCTCCACGGGGTAGT 19980 Query 148720 GGTTGCGGTCGATGATCTTGT-CAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGC 148778 |||| ||| |||| ||||| |||| || || ||||||||| || | | |||| Sbjct 19981 AGTTGACGTCAATGACCTTGTTCAAG-TTCCGGGTCACCACCTTGGTCACCTCGTACAGC 20039 Query 148779 AATTCAAAATCGTACTTG---------TCATCTACGATGCATCGGTTCACGGCGATAGAG 148829 ||| | ||| ||| || || || | | | || | ||| | ||| Sbjct 20040 --TTC----TGGTAGTTGAACACTCCATCCTCCACAAA-CTTGGGG--AGGGCCACAGAC 20090 Query 148830 GCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGA 148889 || || |||||||| ||| |||||| || | ||||||| | |||||| ||||| Sbjct 20091 GCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCACAAG 20150 Query 148890 TTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTG 148949 ||||| | |||| ||| | ||||| || || ||||| |||| |||||||||| Sbjct 20151 TTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTG 20210 Query 148950 TACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG---AACCGATGCAGG 149006 ||||||||| |||| | || || || | ||||| |||| ||| |||| ||| Sbjct 20211 TACAGCATGAACGGCACACCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCA---CAGC 20267 Query 149007 TCCTGCGCGCGCA-CTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCG 149065 | ||| || | | | ||| || ||| ||||||| |||||| ||||| Sbjct 20268 TGCTGGGCATTGATCGTCTTGCGCGC-GCGCCCCTCCTTCTCGTACTTCTCGTACAGAGT 20326 Query 149066 CTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGA 149125 ||||||| | ||||| |||| |||| ||| |||||| || | ||||| | || Sbjct 20327 CTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAGAAAAGGCT 20386 Query 149126 CCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACAT 149185 |||| ||||| ||| | ||| |||||||| ||||||||||| ||||| || ||||| | Sbjct 20387 CCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGTAGAA 20446 Query 149186 GAGGT--CGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTG 149243 ||||| ||||||| ||||| ||| ||| ||| |||||| | || | | Sbjct 20447 GAGGTCGCGCGCGCGGTGCAG--CTCGTTGCCGTGGTTCTTGCGCAGCTCCAGGAACTCG 20504 Query 149244 AATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCG 149300 || | ||| |||||||||||||| | ||| | |||| || ||| ||||||||| || Sbjct 20505 AACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCTCCT 20564 Query 149301 CCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTG 149360 |||||||| || | ||| || ||| || || || | | ||| || || || || Sbjct 20565 CCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCGTTG 20624 Query 149361 GCAGTGCCGTTAGTAGAGCTAATGCGACTG-CCGCGCGCTCGCACTTTGTGCACGTTGAC 149419 | | ||||| || || ||| ||| || | || || | ||||||| | | | Sbjct 20625 GATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTG-GCGCGGATGTTGTGCATGCTAAT 20683 Query 149420 GCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCC 149479 ||| || || ||| | |||| |||||| |||||| | |||||| ||| ||||| Sbjct 20684 GCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCC 20743 Query 149480 CTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGT 149539 ||| || |||| || ||||| |||||| || ||||| ||| |||||| |||| Sbjct 20744 CTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGCGT 20803 Query 149540 GCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTA 149599 |||||| || | ||||| | ||||| ||||| | |||| ||| | ||| || Sbjct 20804 GCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGTGACATGAGCTCATA 20863 Query 149600 CGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCAT 149659 || | || | | ||||| | || || || | || |||||||| | ||| Sbjct 20864 CGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCCACGCGCATGATCAT 20923 Query 149660 ATGCTGCGGTCGCTCCGCCACTTT--GTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGT 149717 ||||| || |||||| | || || ||| | || | |||||| || || Sbjct 20924 CTGCTGGGGGCGCTCCACGACCTTACCGTTC--ACGCGGAAGAGGTAGCCTCGCTCAAGC 20981 Query 149718 GTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGC 149767 |||||| |||| ||||| | ||| |||||||| ||| ||||| ||||| Sbjct 20982 GTCTTGAAGCCGAAGTAGTCGTACTCAAAGTCCCGGTCGTGGATGATGGC 21031 >seq3552 Length=1496 Score = 187 bits (206), Expect = 2e-42 Identities = 511/769 (66%), Gaps = 23/769 (3%) Strand=Plus/Minus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||||||||| ||||| ||||| || ||||| || ||||||| || ||| || | | ||| Sbjct 1256 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCAT 1197 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACT--GTACGAGCAGT 120471 | ||||||||||| || |||| || || | || || || | | |||| ||||| Sbjct 1196 CCAGTCGAACGGGTTCTTCACGTTGTAG-ATCTTGGATGCACCCAGTGAGTAC-AGCAGG 1139 Query 120472 CGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCC 120531 ||||| || || ||||| ||||||| ||||||| | | ||||||||| | || | || Sbjct 1138 CGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCC 1079 Query 120532 ACCGGCAACGCCGACG-TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590 || || | || | || | | ||||| | |||||| |||| || || | || || Sbjct 1078 ACGGGGAGCG-AGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGC 1020 Query 120591 GAGCATAGTGTGGC---CGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTAC---AGGCA 120644 | ||| | ||| | |||| || ||||| | |||| ||||| ||||| Sbjct 1019 GTGCA---CGCGGCTCTCCGGCAGCT--TGTTC--ACCAACTTCG--AGTACATGAGGCA 969 Query 120645 CGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCC 120704 ||| ||||||||||||| ||||||||| || || |||||||| || |||| || Sbjct 968 CGCGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACC 909 Query 120705 GGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACAC 120764 ||||||| ||| | |||||| |||| |||| | ||| ||||| ||||| | Sbjct 908 AGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAAT 849 Query 120765 GCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGAT 120824 |||||||||| ||| || || | || ||||| | | | || ||| Sbjct 848 GCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGACGAAACACGAGGGTCACA 789 Query 120825 CCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAG 120884 |||||| | ||||| |||||| || ||||||||| ||| ||||| || ||| Sbjct 788 CCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAG 729 Query 120885 CAGCATGTCGCGCTCGCCCTCCTCCGCAATCAGCTGATGGATGAGCAGATTGTACATTTC 120944 || || ||| | | ||| || | | ||| ||||| ||||| || Sbjct 728 CAAGTGATCCTTCTCCACGGCGTCCTTGATGTACGTGTCGATCAGCAGCGAGTACACCTC 669 Query 120945 CGTGTGCACGCACTCGATCAGCACTTGCTGGTTGTAAAAGTACTGCGCCTCCAGCTCGGG 121004 || ||| | | |||||| | || | ||| ||| | | |||||| || | | Sbjct 668 CGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACTTG 609 Query 121005 CACCGC-CCGCTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGCGGCGGCGA 121063 |||| | |||| | | ||| ||||| |||||||| | |||| ||| |||| Sbjct 608 CACCTCATTGCTGAAGTTCATCG-CCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGA 550 Query 121064 AGAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTT 121112 |||| || |||||||||||||| ||||| ||||||| |||||| || || Sbjct 549 AGAATGCTAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTCAGGTT 501 >seq134 Length=47979 Score = 145 bits (160), Expect = 7e-30 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| |||| || |||| ||| || ||||||||||| Sbjct 15151 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCA 15210 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| |||| || ||||||||||| || ||||||||||||||||| || || ||||| Sbjct 15211 GCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTC 15270 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | || ||| | ||||||||||| | ||||| || ||||| |||| ||| Sbjct 15271 ACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTC 15330 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 15331 TTCACGAAGATCTGCATG 15348 >seq42 Length=76411 Score = 145 bits (160), Expect = 7e-30 Identities = 153/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || |||| ||| |||||| ||||||||||| Sbjct 56496 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC-GTCCTCCAGCTGCTTGCC 56438 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||||||||| |||||||| |||||||| ||| || ||||| Sbjct 56437 GGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTT 56378 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | | ||| | ||||||||||| | |||| ||| ||||| |||| || Sbjct 56377 CACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAACGT 56318 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 56317 CTTCACGAAGATCTGCATG 56299 Score = 145 bits (160), Expect = 7e-30 Identities = 153/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || |||| ||| |||||| ||||||||||| Sbjct 56724 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC-GTCCTCCAGCTGCTTGCC 56666 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||||||||| |||||||| |||||||| ||| || ||||| Sbjct 56665 GGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTT 56606 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | | ||| | ||||||||||| | |||| ||| ||||| |||| || Sbjct 56605 CACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAACGT 56546 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 56545 CTTCACGAAGATCTGCATG 56527 >seq847 Length=11890 Score = 131 bits (144), Expect = 2e-25 Identities = 123/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | || || ||||||||||| || || ||||||||||| Sbjct 3741 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTT 3682 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||| || ||||||| | |||| |||||| ||||| ||||| | |||| Sbjct 3681 GTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCGGACGGCTCTACGTCCAGCGTGAT 3622 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||| ||||| ||||| || || || || ||||||||| Sbjct 3621 GGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 3585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483391782666480