Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001933325.1_202017-01-04] 4,802 sequences; 38,990,680 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq179 156 4e-33 seq42 152 5e-32 seq134 145 8e-30 seq847 113 5e-20 >seq179 Length=41754 Score = 156 bits (172), Expect = 4e-33 Identities = 354/527 (67%), Gaps = 9/527 (2%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || || ||| | ||||||||||| |||| |||||| ||||||| | || || || Sbjct 20929 CAGCAGATGATCATGCGCGTGGCGCTGGGTATTCACAAGCAAGACATCCAGGCGGCACTG 20870 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 | ||||| | | ||||| || ||||||||||| ||||||| | ||| | Sbjct 20869 CACACGTATGAGCTCATGTCACAGATGTTCTTTACGCACGCGACGCCCACGCTCTTTAAC 20810 Query 7684 GCGGGCACAAACGCG-CCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 || ||||| |||| || || |||| |||||||| |||| |||||| || ||| Sbjct 20809 GCCGGCAC-GCCGCGTCCGCAGCTGTCGTCGTGTTTCCTGCTGGCCATGCAGGACGACTC 20751 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG 7802 || || ||||||||| ||||||| | ||||| || ||||| | | ||| || Sbjct 20750 GATTGAGGGCATTTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCCGGAGG 20691 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGG 7862 || || | | | | || || | ||||||| ||| |||| ||| ||||| Sbjct 20690 TATTGGCATTAGCATGCACAACATCCGCGCCACGAACAGCTACATCCGCGGCACGAACGG 20631 Query 7863 AAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGA 7922 | | ||| ||| | |||||| || | || |||||| || ||| || |||| || Sbjct 20630 ATCATCCAACGGGATCATCCCCATGCTGAGGGTCTTCAATGACACGGCCCGCTATGTGGA 20571 Query 7923 CCAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979 |||||| ||| |||||||||||| | |||||||| |||||||||||||||| || Sbjct 20570 CCAGGGAGGAGGCAAGCGCAAAGGCTCGTTCGCCATCTACCTGGAGCCGTGGCACGCCGA 20511 Query 7980 CATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCA--AAGCGCGC 8037 | | | || | || | ||||| ||| || ||| | ||| |||||| Sbjct 20510 CGTGTTCGAGTTCCTGGAGCTGCGCAAGAACCACGGCAACGA--GCTGCACCGCGCGCGC 20453 Query 8038 GATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGT 8084 || || |||| || ||||||| ||||||||||| |||| ||| || Sbjct 20452 GACCTCTTCTACGCTCTGTGGGTCCCCGATCTGTTCATGAAGCGTGT 20406 >seq42 Length=76411 Score = 152 bits (168), Expect = 5e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| | ||| ||||| || ||||| || ||||||||||||| | ||| || Sbjct 56517 AGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGA 56458 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || |||| ||||||||| |||||||| ||||| || Sbjct 56457 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCC 56398 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| ||||| || || || ||| | | ||| || | |||||||| || || Sbjct 56397 TTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTG 56338 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTTGT 134724 ||||| || || || || || || ||||| || ||||| || |||| || Sbjct 56337 ATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATGTTCTTTTAGT 56289 Score = 149 bits (164), Expect = 6e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || |||| ||| | ||| ||||| || ||||| || |||||||||||| Sbjct 56757 TTTCCGCCGCGAAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCG 56698 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | ||| || ||| || ||||| ||||| || || |||| ||||||||| |||||| Sbjct 56697 CTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGC 56638 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || ||||| || || ||||| ||||| || || || ||| | | ||| || | ||| Sbjct 56637 GGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCC 56578 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || ||||| || || || || || || ||||| || ||||| Sbjct 56577 ACGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 56528 >seq134 Length=47979 Score = 145 bits (160), Expect = 8e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| ||||| || ||||| || ||||||||||||| | ||| | Sbjct 15130 AGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 15189 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || ||||||| |||||||| || ||||| |||||||| Sbjct 15190 CCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCC 15249 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || |||||||| || || || ||| | | ||| |||| |||||||| | || Sbjct 15250 TTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTG 15309 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| || ||||| || ||||| Sbjct 15310 ATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 15347 >seq847 Length=11890 Score = 113 bits (124), Expect = 5e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || ||||||||||| | ||| | ||| |||||||| ||||| || || | Sbjct 3775 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 3716 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| |||||||| || ||||| |||||||| || || || ||||| || ||||| || Sbjct 3715 TCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 3656 Query 134644 CCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 ||||| ||||||||| || ||||| || || ||||| || || || | || || || Sbjct 3655 -CAATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 3597 Query 134703 AAAATTTGCAT 134713 || || ||||| Sbjct 3596 AAGATCTGCAT 3586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505368063461040